Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27o19
         (446 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0475 + 3656628-3656791,3656944-3657013,3657114-3657310,365...    27   5.2  
01_06_1682 - 39130696-39131705,39132355-39132583                       27   5.2  
01_06_1309 - 36170947-36171077,36171227-36172198,36172285-361724...    27   5.2  
04_04_0059 + 22418795-22418908,22419064-22419202,22419437-224195...    27   9.1  
02_05_0077 + 25645730-25645993,25647172-25647648,25648027-256482...    27   9.1  
01_06_0401 + 29038306-29038529,29038815-29038967,29039489-290402...    27   9.1  

>03_01_0475 +
           3656628-3656791,3656944-3657013,3657114-3657310,
           3657409-3657484,3657794-3657877,3658247-3658326,
           3658422-3658548,3658727-3658786,3658874-3658924,
           3659013-3659171,3659296-3659428,3659545-3659717
          Length = 457

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 13/56 (23%), Positives = 26/56 (46%)
 Frame = +3

Query: 156 CYMVILFVSVMSFTIVMGLECLKTKLVDSSLMFNSFMCALYIMIATVWSLKNNLTS 323
           C++V+ +      T+  G +C K+  +     F     ALY  +A ++ L   +T+
Sbjct: 211 CFLVVFYAGTKEPTLQSGSDCKKSARISWGYWFKK---ALYYQVALLYMLARLITN 263


>01_06_1682 - 39130696-39131705,39132355-39132583
          Length = 412

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 345 SIQVVPFSYNDPPPPF 392
           S Q  P SYN PPPP+
Sbjct: 248 SYQAPPTSYNHPPPPY 263


>01_06_1309 -
           36170947-36171077,36171227-36172198,36172285-36172413,
           36172535-36172779,36172904-36173055,36173202-36173306
          Length = 577

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 327 YASNLQSIQVVPFSYNDPPPPFSNI 401
           YASN  ++ + PF+Y   PP  +N+
Sbjct: 424 YASNFPAMPLSPFNYTGTPPNNTNV 448


>04_04_0059 +
           22418795-22418908,22419064-22419202,22419437-22419525,
           22420428-22420690,22420793-22420883,22420966-22421325
          Length = 351

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 42  QNLYPFDCPKTP 7
           +N YP DCPK+P
Sbjct: 207 ENTYPIDCPKSP 218


>02_05_0077 +
           25645730-25645993,25647172-25647648,25648027-25648237,
           25648407-25648564,25648641-25648711,25648829-25648934,
           25649008-25649094,25649701-25650252,25650337-25650403,
           25650971-25651104,25651175-25651228,25651376-25651472,
           25652007-25652212,25652287-25652367,25652543-25652608,
           25653025-25653098,25653766-25653871
          Length = 936

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 306 KNNLTSFYASNLQSIQVVPFSYNDPPPPFSNIV 404
           +N ++S  A    S+ +VP S N  PPPF+  V
Sbjct: 482 QNFVSSSVAPVAPSLGMVPLSNNQGPPPFTQPV 514


>01_06_0401 +
           29038306-29038529,29038815-29038967,29039489-29040296,
           29040393-29040488,29040982-29041251
          Length = 516

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 165 PYNMIWHIDNPCTRPLCG 112
           PY  +WH+  P   PL G
Sbjct: 33  PYRKVWHVPGPVPLPLIG 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,209,504
Number of Sequences: 37544
Number of extensions: 177591
Number of successful extensions: 430
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)