Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27o19
         (446 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC111954-1|AAI11955.1| 1066|Homo sapiens WD repeat domain 67 pro...    30   3.1  
BC101724-1|AAI01725.1| 1066|Homo sapiens WD repeat domain 67 pro...    30   3.1  
AK094612-1|BAC04384.1|  644|Homo sapiens protein ( Homo sapiens ...    30   3.1  
M81758-1|AAA60554.1| 1836|Homo sapiens sodium channel alpha subu...    29   9.5  
L04236-1|AAB59624.1| 1836|Homo sapiens skeletal muscle sodium ch...    29   9.5  
L01983-1|AAA75557.1| 1835|Homo sapiens sodium channel alpha subu...    29   9.5  
AY212253-1|AAO83647.1| 1836|Homo sapiens skeletal muscle voltage...    29   9.5  
AK056434-1|BAB71182.1| 1066|Homo sapiens protein ( Homo sapiens ...    29   9.5  

>BC111954-1|AAI11955.1| 1066|Homo sapiens WD repeat domain 67
           protein.
          Length = 1066

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 336 NLQSIQVVPFSYNDPPPPFSNIVMDDIKNK 425
           N+ S+Q +    N PPPP   ++ D  KNK
Sbjct: 331 NIYSVQALTQEINKPPPPLVKVIEDLPKNK 360


>BC101724-1|AAI01725.1| 1066|Homo sapiens WD repeat domain 67
           protein.
          Length = 1066

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 336 NLQSIQVVPFSYNDPPPPFSNIVMDDIKNK 425
           N+ S+Q +    N PPPP   ++ D  KNK
Sbjct: 331 NIYSVQALTQEINKPPPPLVKVIEDLPKNK 360


>AK094612-1|BAC04384.1|  644|Homo sapiens protein ( Homo sapiens
           cDNA FLJ37293 fis, clone BRAMY2014813. ).
          Length = 644

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 336 NLQSIQVVPFSYNDPPPPFSNIVMDDIKNK 425
           N+ S+Q +    N PPPP   ++ D  KNK
Sbjct: 226 NIYSVQALTQEINKPPPPLVKVIEDLPKNK 255


>M81758-1|AAA60554.1| 1836|Homo sapiens sodium channel alpha subunit
           protein.
          Length = 1836

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
 Frame = +3

Query: 333 SNLQSIQVVPFSYNDPPPPFSNIVMDDI----KNKK*FI 437
           S+L++ + +P  Y DPPP    I ++D+     NKK FI
Sbjct: 56  SDLEAGKNLPMIYGDPPPEVIGIPLEDLDPYYSNKKTFI 94


>L04236-1|AAB59624.1| 1836|Homo sapiens skeletal muscle sodium
           channel alpha subunit protein.
          Length = 1836

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
 Frame = +3

Query: 333 SNLQSIQVVPFSYNDPPPPFSNIVMDDI----KNKK*FI 437
           S+L++ + +P  Y DPPP    I ++D+     NKK FI
Sbjct: 56  SDLEAGKNLPMIYGDPPPEVIGIPLEDLDPYYSNKKTFI 94


>L01983-1|AAA75557.1| 1835|Homo sapiens sodium channel alpha subunit
           protein.
          Length = 1835

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
 Frame = +3

Query: 333 SNLQSIQVVPFSYNDPPPPFSNIVMDDI----KNKK*FI 437
           S+L++ + +P  Y DPPP    I ++D+     NKK FI
Sbjct: 56  SDLEAGKNLPMIYGDPPPEVIGIPLEDLDPYYSNKKTFI 94


>AY212253-1|AAO83647.1| 1836|Homo sapiens skeletal muscle
           voltage-dependent sodium channel type IV alpha subunit
           protein.
          Length = 1836

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
 Frame = +3

Query: 333 SNLQSIQVVPFSYNDPPPPFSNIVMDDI----KNKK*FI 437
           S+L++ + +P  Y DPPP    I ++D+     NKK FI
Sbjct: 56  SDLEAGKNLPMIYGDPPPEVIGIPLEDLDPYYSNKKTFI 94


>AK056434-1|BAB71182.1| 1066|Homo sapiens protein ( Homo sapiens
           cDNA FLJ31872 fis, clone NT2RP7002376, weakly similar to
           M PROTEIN, SEROTYPE 2.1 PRECURSOR. ).
          Length = 1066

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 336 NLQSIQVVPFSYNDPPPPFSNIVMDDIKNKK 428
           N+ S+Q +    N PPPP   ++ +D+ N K
Sbjct: 331 NIYSVQALTQEINKPPPPLVKVI-EDLPNNK 360


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,355,907
Number of Sequences: 237096
Number of extensions: 1006555
Number of successful extensions: 1576
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1576
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3644351872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)