Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27o19
         (446 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   3.5  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   3.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   3.5  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   6.1  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   6.1  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   6.1  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   6.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   6.1  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    21   8.1  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    21   8.1  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    21   8.1  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    21   8.1  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    21   8.1  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    21   8.1  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    21   8.1  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   8.1  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   8.1  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = -3

Query: 162 YNMIWHIDNP 133
           Y + WH+D P
Sbjct: 39  YELFWHVDQP 48


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 198 IVMGLECLKTKLVDSSLMFNSFMCALYIMIATVWSLKNNLTSFYA 332
           IV+G   + T +  +S + NS     YI  + +W L   +  F A
Sbjct: 264 IVLGTNTILTFMTLASKVENSLPKVSYIKASEIWFLGCTIFLFAA 308


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = -3

Query: 162 YNMIWHIDNP 133
           Y + WH+D P
Sbjct: 39  YELFWHVDQP 48


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 60  LNC*QKQNLYPFDCP 16
           L+C  + N++PFD P
Sbjct: 184 LSCQGRLNIFPFDDP 198


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 60  LNC*QKQNLYPFDCP 16
           L+C  + N++PFD P
Sbjct: 184 LSCQGRLNIFPFDDP 198


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 60  LNC*QKQNLYPFDCP 16
           L+C  + N++PFD P
Sbjct: 235 LSCQGRLNIFPFDDP 249


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 60  LNC*QKQNLYPFDCP 16
           L+C  + N++PFD P
Sbjct: 184 LSCQGRLNIFPFDDP 198


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 270 ALYIMIATVWSLKNNLTSFY 329
           A+Y+++   WSL   +  FY
Sbjct: 243 AVYVLVNGSWSLPGFVCDFY 262


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +3

Query: 351 QVVPFSYNDPPPPFSNIV 404
           QV  F Y  PP PF   +
Sbjct: 144 QVPRFRYIGPPTPFPRFI 161


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +3

Query: 351 QVVPFSYNDPPPPFSNIV 404
           QV  F Y  PP PF   +
Sbjct: 144 QVPRFRYIGPPTPFPRFI 161


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +3

Query: 351 QVVPFSYNDPPPPFSNIV 404
           QV  F Y  PP PF   +
Sbjct: 144 QVPRFRYIGPPTPFPRFI 161


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +3

Query: 351 QVVPFSYNDPPPPFSNIV 404
           QV  F Y  PP PF   +
Sbjct: 144 QVPRFRYIGPPTPFPRFI 161


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +3

Query: 351 QVVPFSYNDPPPPFSNIV 404
           QV  F Y  PP PF   +
Sbjct: 144 QVPRFRYIGPPTPFPRFI 161


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +3

Query: 351 QVVPFSYNDPPPPFSNIV 404
           QV  F Y  PP PF   +
Sbjct: 148 QVPRFRYIGPPTPFPRFI 165


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +3

Query: 351 QVVPFSYNDPPPPFSNIV 404
           QV  F Y  PP PF   +
Sbjct: 144 QVPRFRYIGPPTPFPRFI 161


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +3

Query: 351 QVVPFSYNDPPPPFSNIV 404
           QV  F Y  PP PF   +
Sbjct: 369 QVPRFRYIGPPTPFPRFI 386


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = +3

Query: 351 QVVPFSYNDPPPPFSNIVMDDI 416
           Q+  F Y  PP PF   +  ++
Sbjct: 363 QIPRFRYIGPPTPFPRFIPPNV 384


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,127
Number of Sequences: 438
Number of extensions: 2369
Number of successful extensions: 47
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11697255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)