Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27o14
(551 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC725.15 |ura5||orotate phosphoribosyltransferase Ura5 |Schizo... 43 3e-05
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 34 0.012
SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual 31 0.15
SPBC25H2.08c |mrs2||magnesium ion transporter Mrs2|Schizosacchar... 26 4.2
SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.2
SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 22 4.8
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 5.6
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 25 5.6
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S... 25 5.6
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 25 7.4
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 25 7.4
SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr... 25 9.8
>SPBC725.15 |ura5||orotate phosphoribosyltransferase Ura5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 43.2 bits (97), Expect = 3e-05
Identities = 26/115 (22%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Frame = +2
Query: 23 DIMELTSNMLYDLAVKDSQFDHLCGVPYTALPIATLLSIQAKKP------MLMRRKETKS 184
D+ L + + FD + G Y + +A + +++ + RKE KS
Sbjct: 44 DLCALAEAYAETIIAMNVDFDVIFGPAYKGISLAAITAVKLYEKTGKSYGFAYNRKEAKS 103
Query: 185 YGTKKSIEGHFKKDDTCLIIEDVITSGSSILETVKDLKNEGLVTTEAAIILDREQ 349
+G ++ G + L+++DVIT+G++I E + L+ + + ++LDR++
Sbjct: 104 HGEGGNLVGAEMEGKKVLLLDDVITAGTAIREAISFLEPKHVKLAGIVLLLDRQE 158
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 34.3 bits (75), Expect = 0.012
Identities = 39/153 (25%), Positives = 65/153 (42%), Gaps = 15/153 (9%)
Frame = +2
Query: 86 HLCGVPYTALPIATLLSIQA----KKPMLMRRKETKSYGTKKSIEGHFKKDDTCL---II 244
HLC +PYT P +++ I+ K RR S T+KSI H K D + +
Sbjct: 539 HLCTLPYTYQPFSSVEKIETPPNNSKNQTYRRSSRGSNKTRKSI-SHSKNTDKHVGNELP 597
Query: 245 EDVITSGSSI-----LETVKDLKNEGLVTTEAAIILDR---EQGGRENLAKNGIHVKSLF 400
+D+ + S+ +KD + LV+ + +R G R L K+ V L
Sbjct: 598 QDIPSWLRSLRLHKYTNNLKDTDWDALVSLSDLDLQNRGIMALGARRKLLKSFQEVAPLV 657
Query: 401 TMRTLIEILKKHKKITDEIVVTVKNYLNETKAP 499
+ + + E LK K + E + + K + + P
Sbjct: 658 SSKKMNENLKAAKNQSSESLTSFKGHTDSEDLP 690
>SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 30.7 bits (66), Expect = 0.15
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +2
Query: 203 IEGHFKKDDTCLIIEDVITSGSSILETVKDLKNEGLVT-TEAAIILDREQGGRENLAKNG 379
++ KKD CL D+ G I E +DL G VT T AI++ +E + +
Sbjct: 1 MDDFLKKDLGCLRSGDLKKCGELICEICRDLYTSGWVTGTGDAIVIAPSGVQKERMELHH 60
Query: 380 IHVKSLFT 403
+ V SL T
Sbjct: 61 LFVMSLIT 68
>SPBC25H2.08c |mrs2||magnesium ion transporter
Mrs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 422
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 146 KKPMLMRRKETKSYGTKKSIEGHFKKDDTC 235
K +LM E +G + I G FKK D C
Sbjct: 75 KNRLLMNCTEFDDHGNVRVISGDFKKMDLC 104
>SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 220
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 372 LAKFSLPPCSRSKIMAASVVTSPSFFKSLTVSS 274
L+K LPP S SKIM S+ P+ +SS
Sbjct: 60 LSKSPLPPFSPSKIMNRSISVPPTNISVPQISS 92
>SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 180
Score = 22.2 bits (45), Expect(2) = 4.8
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 549 FFFSYGSITRSISFSI 502
F+F +GS+T SI SI
Sbjct: 35 FYFFFGSLTFSIEVSI 50
Score = 21.8 bits (44), Expect(2) = 4.8
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = -3
Query: 390 FTWMPFLAKFSLPPCSRSKI 331
F +P++ FS P C +++I
Sbjct: 73 FNDLPYVLSFSAPECVKNEI 92
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 5.6
Identities = 15/63 (23%), Positives = 29/63 (46%)
Frame = +2
Query: 332 ILDREQGGRENLAKNGIHVKSLFTMRTLIEILKKHKKITDEIVVTVKNYLNETKAPVIEK 511
+ +R + G + N +++ F ++ +DE+ V V + L E ++P EK
Sbjct: 322 LFERLKVGTNKVKNNSVNIAQSFLEPQTRSTFLRYL-FSDEVSVKVCHVLKELRSPTGEK 380
Query: 512 LME 520
L E
Sbjct: 381 LFE 383
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 165 EGKKQNLMEPKKALKVILKKMTHVSSS 245
+G NL++ K+LK K ++ +SSS
Sbjct: 153 KGNNNNLLKENKSLKTTAKDLSDISSS 179
>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 582
Score = 25.4 bits (53), Expect = 5.6
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 296 KNEGLVTTEAAIILDREQGGRENLAKN-GIHVKSLFTMRTLIEILKKHK 439
K++ TT + +G E L + G HV+SL R LIEI K ++
Sbjct: 78 KSQNSSTTRGSAKKQSSKGLEEKLINSYGTHVESLNKGRRLIEIWKYYE 126
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 25.0 bits (52), Expect = 7.4
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Frame = +2
Query: 245 EDVITSGSSILETVKDLKNEGLVTTEAAIILDREQGGRENLAKNGIHVKSL-FTMRTLIE 421
+DV S I + V+D KN ++ + Q + + KNG +V SL + I
Sbjct: 705 KDVERVVSEIKQVVRDAKNHEILHSHVEEFDFPAQYSKNVIGKNGSNVSSLREDLGVQIN 764
Query: 422 ILKKHKKITDEIVVTVKNYLNETKAPV---IEKLMERVIL 532
+ + H +I +K + ET A + IE L++ IL
Sbjct: 765 VEEGHIRIQG-----IKKNVEETAARIKSQIEALIDDTIL 799
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 25.0 bits (52), Expect = 7.4
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +2
Query: 215 FKKDDTCLIIEDVITSGSSILETVKDLKNEGLVT 316
F D L IED T S +LE + DLK + LV+
Sbjct: 827 FSGDSYELNIEDPDTKISYLLEDLSDLKYKSLVS 860
>SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 226
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +1
Query: 118 HCYTTKYTSEKTYVDEKERNKI 183
HCY ++Y ++K + +K N+I
Sbjct: 16 HCYPSEYLAKKVTIHDKIINRI 37
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,319,107
Number of Sequences: 5004
Number of extensions: 47403
Number of successful extensions: 147
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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