Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27o14
(551 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0191 + 41885121-41885909,41886152-41886190,41886701-418867... 147 4e-36
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467... 34 0.066
06_01_1116 + 9197761-9199956 30 1.4
08_01_0030 + 222748-222829,223224-223448,223800-224204,224773-22... 29 3.3
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798... 28 5.7
12_01_0445 - 3513733-3513819,3514392-3514613,3514730-3514999,351... 27 7.5
12_02_1038 - 25596027-25596393,25596492-25596660,25597283-255973... 27 10.0
05_01_0119 + 820566-820739,822708-822737,823153-823266,823341-82... 27 10.0
>01_07_0191 +
41885121-41885909,41886152-41886190,41886701-41886784,
41887331-41887413,41887501-41887588,41887736-41887990,
41888275-41888403
Length = 488
Score = 147 bits (357), Expect = 4e-36
Identities = 70/171 (40%), Positives = 110/171 (64%)
Frame = +2
Query: 2 RVIVSYPDIMELTSNMLYDLAVKDSQFDHLCGVPYTALPIATLLSIQAKKPMLMRRKETK 181
R++V++P ++ +++L L +D LCGVPYTALPIA++LS A PML+RR
Sbjct: 39 RMLVAHPRLLSTVASLLGSLPAT-RPYDLLCGVPYTALPIASVLSAAASVPMLLRRYHVT 97
Query: 182 SYGTKKSIEGHFKKDDTCLIIEDVITSGSSILETVKDLKNEGLVTTEAAIILDREQGGRE 361
+ + ++G F+ D LI+ED++T+GSS+LETV L+ GLV +A +++DREQGGRE
Sbjct: 98 PHAAAECLDGSFRAGDAVLIVEDLVTTGSSVLETVAPLREVGLVVADAVVVIDREQGGRE 157
Query: 362 NLAKNGIHVKSLFTMRTLIEILKKHKKITDEIVVTVKNYLNETKAPVIEKL 514
NLA NG+ + SL T+ ++ +L K K+ +E VK +L+ + + L
Sbjct: 158 NLAANGVALHSLMTLTEVLAVLVKRGKLGEEKAQEVKRFLDANRKMAVPGL 208
>01_06_0481 - 29646245-29646371,29646474-29646556,29646672-29646752,
29646843-29646899,29647007-29647094,29647304-29647374,
29647457-29647585,29647662-29648051,29648332-29648517,
29648612-29648692,29648787-29648879,29648966-29649086,
29649200-29649409,29649560-29649727,29649898-29650065,
29650144-29650311,29650453-29650620,29650738-29650905,
29651023-29651190,29651567-29651734,29652391-29652558,
29652645-29652812,29655720-29655887,29656069-29656236,
29656391-29656558,29656670-29656837,29657525-29657664,
29658033-29658221,29658243-29658315,29658379-29658452,
29658535-29658654,29658718-29658738,29658794-29658999,
29659094-29659271,29660066-29660126,29660232-29660341,
29660427-29660558,29661091-29661258,29661339-29661465,
29661794-29661831,29663321-29663422,29663505-29663562,
29663659-29663760,29663844-29663990,29664098-29664234,
29664313-29664462,29664561-29664720,29665820-29665878,
29666025-29666181,29666288-29666433,29666523-29666666,
29667242-29667376
Length = 2344
Score = 34.3 bits (75), Expect = 0.066
Identities = 17/71 (23%), Positives = 37/71 (52%)
Frame = +2
Query: 134 SIQAKKPMLMRRKETKSYGTKKSIEGHFKKDDTCLIIEDVITSGSSILETVKDLKNEGLV 313
++ AK+ +L+ +E + K E H + D+ +ED S+ T+K L+ +G +
Sbjct: 1497 NVGAKESLLLTEREQNASTLKLLAEAHLEIDELIRKLEDSDRKSDSLQSTIKRLEEDG-I 1555
Query: 314 TTEAAIILDRE 346
EA ++ +++
Sbjct: 1556 AKEALLLTEKQ 1566
>06_01_1116 + 9197761-9199956
Length = 731
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 94 WSSIYCLAHCYTTKYTSEKTYVDEKERNKILWNQKKH 204
+S+I C ++ YT E ++ E ERNK NQ+ H
Sbjct: 602 FSAIMCFSYILLVYYTEEWSWPMENERNKEKCNQEFH 638
>08_01_0030 +
222748-222829,223224-223448,223800-224204,224773-225389
Length = 442
Score = 28.7 bits (61), Expect = 3.3
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Frame = +2
Query: 251 VITSGSSILETVKDLKNEGLVTTEAAIILDREQGG-RENLA--KNGIHVKSLFTMRTLIE 421
VI G + V++ +N G +A I+ D E G ++A +GI++ ++F + E
Sbjct: 67 VIRGGCQFDDKVRNAQNAGF---KAVIVYDDEDSGVLVSMAGSSSGIYIYAVFLSKASGE 123
Query: 422 ILKKHKKITDEIVVTVKNYLN 484
+LKK+ +D V + Y N
Sbjct: 124 VLKKYSGQSDVEVWILPVYEN 144
>09_04_0087 +
14476539-14476675,14478876-14479635,14479720-14479871,
14479958-14480024,14480632-14480831,14480915-14481068,
14481585-14481669,14481766-14481857,14482575-14482766,
14482867-14482992,14483072-14483125,14483494-14483550,
14484509-14484606,14484703-14485038,14485116-14485203,
14486891-14487016,14487082-14487138,14488054-14488133,
14488228-14488270,14488948-14489034,14489331-14489420,
14489996-14490054,14490141-14490231,14490330-14490495,
14490662-14490755,14491787-14492909
Length = 1537
Score = 27.9 bits (59), Expect = 5.7
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 389 KSLFTMRTLIEILKKHKKITDEIVVTVKNYLNETKA 496
K + + I +L+K ++T + + N+LN+TKA
Sbjct: 874 KDVISQSQAISVLEKSPQLTFAVTNALNNFLNDTKA 909
>12_01_0445 -
3513733-3513819,3514392-3514613,3514730-3514999,
3515033-3517110,3517649-3517976,3519136-3519255,
3519299-3519352,3520115-3520154,3520344-3520411
Length = 1088
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/61 (26%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +2
Query: 341 REQGGRENLAKNGIHVKSLF-TMRTLIEILKKHKKITDEIVVTVKNYLNETKAPVIEKLM 517
R++ +ENL + + F T+ E++++H K+T+E V+ + E++ ++KL+
Sbjct: 162 RDEDVKENLKSLNDKLAAAFLTINAKEELVRQHAKVTEEAVLGWEQ--AESEVAALKKLL 219
Query: 518 E 520
E
Sbjct: 220 E 220
>12_02_1038 -
25596027-25596393,25596492-25596660,25597283-25597349,
25597617-25597794,25599157-25599228,25599311-25599717,
25600035-25600740,25600829-25600998,25601963-25602022,
25602385-25602435
Length = 748
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 116 PIATLLSIQAKKPMLMRRKETKSYGTKKSIEGHFKKD 226
P+ L + +KKP R TK G +EGH K D
Sbjct: 628 PLVALPPLSSKKP----RSSTKLGGYSSRLEGHLKSD 660
>05_01_0119 +
820566-820739,822708-822737,823153-823266,823341-823433,
823521-823586,824076-824174,824480-824559,825039-825151,
825600-825688,825955-826041,826128-826130,826285-826383
Length = 348
Score = 27.1 bits (57), Expect = 10.0
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = -3
Query: 435 CFLSISINVLIVNNDFTWMPFLAKFSLPPCSRSKIMAASVVTSPSFFKSLTV 280
C LS+S +++ N + F+ F P C I+ +SV T+ FF S T+
Sbjct: 251 CVLSLS-GLILQNQMIPAVDFM--FRHPDCFYDVIILSSVATASQFFISYTI 299
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,856,375
Number of Sequences: 37544
Number of extensions: 265235
Number of successful extensions: 642
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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