Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27o14
         (551 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   3.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   4.8  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   6.3  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   8.3  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   8.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   8.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   8.3  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +2

Query: 2   RVIVSYPDI-MELTSNMLYDLAVKDSQFDHLCGVPY 106
           +VI  +  I  +  S+   D A+K  +FDH    P+
Sbjct: 38  KVIYEWKHIDFDFGSDERRDAAIKSGEFDHTKNYPF 73


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 13/68 (19%), Positives = 30/68 (44%)
 Frame = +2

Query: 23   DIMELTSNMLYDLAVKDSQFDHLCGVPYTALPIATLLSIQAKKPMLMRRKETKSYGTKKS 202
            D+++  ++ +YD+ V +    ++CG    A  +   L    +    M  K+ ++Y     
Sbjct: 1049 DLIQAEASQIYDMLVYEGGHFYVCGDCTMAEDVYQTLKHIIQTHGEMTDKQVEAYMLSLR 1108

Query: 203  IEGHFKKD 226
             E  + +D
Sbjct: 1109 DENRYHED 1116


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -2

Query: 469 YCNYNFICYF 440
           YC  NF CY+
Sbjct: 10  YCRRNFSCYY 19


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +1

Query: 91  VWSSIYCLAHCYTTKY 138
           V   IYC  +CY  K+
Sbjct: 207 VMLGIYCRLYCYAQKH 222


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 534 GSITRSISFSITGA 493
           GSITRSI  +IT +
Sbjct: 124 GSITRSIRLTITAS 137


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 534 GSITRSISFSITGA 493
           GSITRSI  +IT +
Sbjct: 124 GSITRSIRLTITAS 137


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 534 GSITRSISFSITGA 493
           GSITRSI  +IT +
Sbjct: 63  GSITRSIRLTITAS 76


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,321
Number of Sequences: 438
Number of extensions: 3380
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)