Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27o11
(305 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 68 3e-13
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 68 3e-13
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 28 0.27
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 28 0.36
SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces pomb... 25 1.9
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 25 3.3
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 24 5.8
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 5.8
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 23 7.7
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 23 7.7
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce... 23 7.7
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 23 7.7
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 68.1 bits (159), Expect = 3e-13
Identities = 29/63 (46%), Positives = 44/63 (69%)
Frame = +2
Query: 5 EIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLM 184
++I ++E+V KLIP+ I + IEKA + IYPL++V +RKVK+LK P+ + KL+
Sbjct: 170 QVIQNQANGCSMKELVQKLIPEVIGRAIEKATNNIYPLQNVFVRKVKILKAPKHDAQKLL 229
Query: 185 ELH 193
ELH
Sbjct: 230 ELH 232
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 68.1 bits (159), Expect = 3e-13
Identities = 28/63 (44%), Positives = 46/63 (73%)
Frame = +2
Query: 5 EIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLM 184
++I ++ +RE+V KLIP+ I ++IE+A I+PL++V +RKVK+LK P+ + KL+
Sbjct: 170 QVIQNQTSSCSMRELVQKLIPEVIGREIERATGSIFPLQNVLVRKVKILKAPKHDAQKLL 229
Query: 185 ELH 193
ELH
Sbjct: 230 ELH 232
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 28.3 bits (60), Expect = 0.27
Identities = 11/45 (24%), Positives = 24/45 (53%)
Frame = +2
Query: 2 NEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIR 136
+E + D +R++ ++ + +A ++ C GI +R+VC R
Sbjct: 386 HEFVPPDALEPLVRKIADEFVTSGVANEV--VCAGINAIREVCAR 428
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 27.9 bits (59), Expect = 0.36
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -1
Query: 185 PSTSRSRNGASSTLSPFGCKHRAE 114
PSTSR RN S LS KHRA+
Sbjct: 736 PSTSRERNNNISELSNSRTKHRAK 759
>SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 202
Score = 25.4 bits (53), Expect = 1.9
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 118 ARCLHPKGESVEEAPFRDLEVD 183
+RCL ++V+EA RDLE++
Sbjct: 22 SRCLGFAAQNVDEANLRDLEIE 43
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 24.6 bits (51), Expect = 3.3
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 186 NFTAKAVEARGKPETSLNGRRATSLPFKRVFN*IMKTKKK 305
N TA A K ++ + A+S P K+ + + K+KKK
Sbjct: 256 NGTAGGTSASAKSTSAADQAVASSKPIKKAWASVAKSKKK 295
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 23.8 bits (49), Expect = 5.8
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = -1
Query: 182 STSRSRNGASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP 42
S + S N +S L R EG PSR QWS +S+ P
Sbjct: 330 SAATSGNISSPALFDSELGARPEGSVAIEPSRVLLQWSSQSSSHTIP 376
>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 452
Score = 23.8 bits (49), Expect = 5.8
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Frame = -2
Query: 184 HQLRDL-ETGPLQHFHLSDANIAQRV-DAMAGLLDVLGNGVRNQLVHHLPEFRVSDVACN 11
H DL E H H + V +A V GNG++N L+H+ E +D +
Sbjct: 265 HHFCDLSEISKFNHQHSGKPDHPSLVSNASLAPFIVEGNGIKNGLLHYNMETAETDESYT 324
Query: 10 D 8
D
Sbjct: 325 D 325
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 23.4 bits (48), Expect = 7.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 223 GFPLASTAFAVKFHQLRDLET 161
G PLA AF +H D+ET
Sbjct: 54 GAPLAKVAFRNPYHYRTDVET 74
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 23.4 bits (48), Expect = 7.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 223 GFPLASTAFAVKFHQLRDLET 161
G PLA AF +H D+ET
Sbjct: 54 GAPLAKVAFRNPYHYRTDVET 74
>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 906
Score = 23.4 bits (48), Expect = 7.7
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 124 IAQRVDAMAGLLDVLGNGVRNQLVH 50
++QR+ + LLD+LG V +L H
Sbjct: 795 VSQRLISPTQLLDILGKSVNIKLEH 819
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 23.4 bits (48), Expect = 7.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 223 GFPLASTAFAVKFHQLRDLET 161
G PLA AF +H D+ET
Sbjct: 54 GAPLAKVAFRNPYHYRTDVET 74
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,083,071
Number of Sequences: 5004
Number of extensions: 17664
Number of successful extensions: 60
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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