Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27o11
         (305 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF034971-1|AAC62117.1|  268|Drosophila melanogaster ribosomal pr...   111   2e-25
AE014135-6|AAN06542.1|  163|Drosophila melanogaster CG2168-PD, i...   111   2e-25
AE014135-5|AAN06541.1|  218|Drosophila melanogaster CG2168-PB, i...   111   2e-25
AE014135-4|AAF59372.1|  268|Drosophila melanogaster CG2168-PA, i...   111   2e-25
Y10115-1|CAA71201.1|  270|Drosophila melanogaster ribosomal prot...    98   2e-21
AY051866-1|AAK93290.1|  332|Drosophila melanogaster LD36157p pro...    27   3.4  
AE014298-2587|AAF48743.1|  332|Drosophila melanogaster CG8326-PA...    27   3.4  
BT023139-1|AAY55555.1|  359|Drosophila melanogaster IP10845p pro...    26   7.9  

>AF034971-1|AAC62117.1|  268|Drosophila melanogaster ribosomal
           protein S3a protein.
          Length = 268

 Score =  111 bits (267), Expect = 2e-25
 Identities = 56/96 (58%), Positives = 70/96 (72%), Gaps = 5/96 (5%)
 Frame = +2

Query: 5   EIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLM 184
           +IIT +V+ ++L+++VNKL  DSIAKDIEK+C  IYPL DV IRKVKVLK+PRF++SKL+
Sbjct: 173 DIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLL 232

Query: 185 ELHXXXXXXXXXXXDKSE-----RPEGYEPPVQESV 277
           ELH             SE     RPEGYEPPVQE+V
Sbjct: 233 ELHGDGGGKSVEAVVSSEGAVIDRPEGYEPPVQEAV 268


>AE014135-6|AAN06542.1|  163|Drosophila melanogaster CG2168-PD,
           isoform D protein.
          Length = 163

 Score =  111 bits (267), Expect = 2e-25
 Identities = 56/96 (58%), Positives = 70/96 (72%), Gaps = 5/96 (5%)
 Frame = +2

Query: 5   EIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLM 184
           +IIT +V+ ++L+++VNKL  DSIAKDIEK+C  IYPL DV IRKVKVLK+PRF++SKL+
Sbjct: 68  DIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLL 127

Query: 185 ELHXXXXXXXXXXXDKSE-----RPEGYEPPVQESV 277
           ELH             SE     RPEGYEPPVQE+V
Sbjct: 128 ELHGDGGGKSVEAVVSSEGAVIDRPEGYEPPVQEAV 163


>AE014135-5|AAN06541.1|  218|Drosophila melanogaster CG2168-PB,
           isoform B protein.
          Length = 218

 Score =  111 bits (267), Expect = 2e-25
 Identities = 56/96 (58%), Positives = 70/96 (72%), Gaps = 5/96 (5%)
 Frame = +2

Query: 5   EIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLM 184
           +IIT +V+ ++L+++VNKL  DSIAKDIEK+C  IYPL DV IRKVKVLK+PRF++SKL+
Sbjct: 123 DIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLL 182

Query: 185 ELHXXXXXXXXXXXDKSE-----RPEGYEPPVQESV 277
           ELH             SE     RPEGYEPPVQE+V
Sbjct: 183 ELHGDGGGKSVEAVVSSEGAVIDRPEGYEPPVQEAV 218


>AE014135-4|AAF59372.1|  268|Drosophila melanogaster CG2168-PA,
           isoform A protein.
          Length = 268

 Score =  111 bits (267), Expect = 2e-25
 Identities = 56/96 (58%), Positives = 70/96 (72%), Gaps = 5/96 (5%)
 Frame = +2

Query: 5   EIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLM 184
           +IIT +V+ ++L+++VNKL  DSIAKDIEK+C  IYPL DV IRKVKVLK+PRF++SKL+
Sbjct: 173 DIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLL 232

Query: 185 ELHXXXXXXXXXXXDKSE-----RPEGYEPPVQESV 277
           ELH             SE     RPEGYEPPVQE+V
Sbjct: 233 ELHGDGGGKSVEAVVSSEGAVIDRPEGYEPPVQEAV 268


>Y10115-1|CAA71201.1|  270|Drosophila melanogaster ribosomal protein
           S3a protein.
          Length = 270

 Score = 97.9 bits (233), Expect = 2e-21
 Identities = 52/96 (54%), Positives = 67/96 (69%), Gaps = 5/96 (5%)
 Frame = +2

Query: 5   EIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLM 184
           +IIT +V+ ++L+++VNKL  DSIAKDIEK+C  IYPL DV IRKVKVLK+PRF++SKL+
Sbjct: 175 DIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLL 234

Query: 185 ELHXXXXXXXXXXXDKSE-RPEG----YEPPVQESV 277
           ELH             SE  P+      +PPVQESV
Sbjct: 235 ELHGDGGGKSVEAVVSSEGAPKSTALKVKPPVQESV 270


>AY051866-1|AAK93290.1|  332|Drosophila melanogaster LD36157p
           protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 14/54 (25%), Positives = 31/54 (57%)
 Frame = +2

Query: 26  TNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLME 187
           T+ +    VN++   S+ +   +A +G+  +R+    ++ V KRP+ EI +L++
Sbjct: 103 TDEDYLRRVNRMTNASVREAHYEAKYGVNVIRNPKTGEITVQKRPKNEIDELLK 156


>AE014298-2587|AAF48743.1|  332|Drosophila melanogaster CG8326-PA
           protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 14/54 (25%), Positives = 31/54 (57%)
 Frame = +2

Query: 26  TNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLME 187
           T+ +    VN++   S+ +   +A +G+  +R+    ++ V KRP+ EI +L++
Sbjct: 103 TDEDYLRRVNRMTNASVREAHYEAKYGVNVIRNPKTGEITVQKRPKNEIDELLK 156


>BT023139-1|AAY55555.1|  359|Drosophila melanogaster IP10845p
           protein.
          Length = 359

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 116 EGRCHGRPSRCPWQWSQESTCSPP 45
           EG     P+  P+ WS+ ST SPP
Sbjct: 282 EGEGAFAPAAPPYPWSEGSTLSPP 305


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,367,324
Number of Sequences: 53049
Number of extensions: 218647
Number of successful extensions: 645
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 24,988,368
effective HSP length: 74
effective length of database: 21,062,742
effective search space used: 568694034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)