Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27o11
         (305 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...    99   7e-22
L25599-3|ABN43087.1|  570|Caenorhabditis elegans Hypothetical pr...    29   0.85 
AC006649-2|AAF39864.2|  259|Caenorhabditis elegans Hypothetical ...    27   3.4  
Z82283-1|CAB05282.1|  354|Caenorhabditis elegans Hypothetical pr...    26   4.5  
U80030-12|AAG24159.1|  391|Caenorhabditis elegans Hypothetical p...    26   4.5  
AY046083-1|AAL02420.1|  354|Caenorhabditis elegans zinc finger p...    26   4.5  
AC025722-1|AAK68507.1|  554|Caenorhabditis elegans Hypothetical ...    26   4.5  
U13071-1|AAL65794.1|  462|Caenorhabditis elegans Hypothetical pr...    26   6.0  
AC006603-4|AAF39747.2|  379|Caenorhabditis elegans Hypothetical ...    26   6.0  

>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score = 98.7 bits (235), Expect = 7e-22
 Identities = 45/89 (50%), Positives = 64/89 (71%)
 Frame = +2

Query: 11  ITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMEL 190
           I ++VT  +L+EVV+KLIPDSI KDIEK C  +YPL++V IRKVK++KRP+ ++ +L +L
Sbjct: 170 IEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVKIIKRPKVDLGRLHDL 229

Query: 191 HXXXXXXXXXXXDKSERPEGYEPPVQESV 277
           H           +K +RP+ YEPPVQ+ V
Sbjct: 230 H-GDSITVGADGEKVDRPDDYEPPVQQEV 257


>L25599-3|ABN43087.1|  570|Caenorhabditis elegans Hypothetical
           protein F54H12.8 protein.
          Length = 570

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -1

Query: 182 STSRSRNG--ASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP 42
           S+S S N   ASST S     +    R   +P+  PWQ  Q S  +PPP
Sbjct: 94  SSSYSGNSLTASSTTSDPSIPNPTRKRITRQPNYPPWQPHQPSNPNPPP 142


>AC006649-2|AAF39864.2|  259|Caenorhabditis elegans Hypothetical
           protein H01M10.1 protein.
          Length = 259

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 115 SARCLHPKGESVEEAPFRDLEVDGT 189
           SA C  P+  SV E PF  +  DGT
Sbjct: 78  SASCSQPRAPSVYEDPFVAVAADGT 102


>Z82283-1|CAB05282.1|  354|Caenorhabditis elegans Hypothetical
           protein T23G4.1 protein.
          Length = 354

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -1

Query: 188 VPSTSRSRNGASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP 42
           +P  S  +NGASS+ SP G K       H +  +   Q  Q+S+    P
Sbjct: 37  LPEGSSKKNGASSSSSPQGKKDEKNHILHHQHHQQQQQSKQKSSPRSTP 85


>U80030-12|AAG24159.1|  391|Caenorhabditis elegans Hypothetical
           protein K12D9.1 protein.
          Length = 391

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 103 MAGLLDVLGNGVRNQLVHHLPEFRVSDVACND 8
           ++GL+   GNG++ +L      FRV DV C +
Sbjct: 184 ISGLIPAFGNGIKEKLED--GGFRVLDVGCGE 213


>AY046083-1|AAL02420.1|  354|Caenorhabditis elegans zinc finger
           protein TLP-1 protein.
          Length = 354

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -1

Query: 188 VPSTSRSRNGASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP 42
           +P  S  +NGASS+ SP G K       H +  +   Q  Q+S+    P
Sbjct: 37  LPEGSSKKNGASSSSSPQGKKDEKNHILHHQHHQQQQQSKQKSSPRSTP 85


>AC025722-1|AAK68507.1|  554|Caenorhabditis elegans Hypothetical
           protein Y50D4C.2 protein.
          Length = 554

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
 Frame = -2

Query: 262 GRLVALRPFRLVSGFPLASTAFA--VKFHQLRDLETGPLQHFHLSDANIAQR--VDAMAG 95
           G+ +A RPF+LV+G     TAF        +  L    +    L D  I  R  +D +  
Sbjct: 478 GQEIATRPFQLVTGRTWKGTAFGGWKSVESVPRLVDDYMNKKLLIDEFITHRCNIDDINA 537

Query: 94  LLDVL--GNGVRNQL 56
             DVL  G G+R++L
Sbjct: 538 AFDVLRKGEGLRSRL 552


>U13071-1|AAL65794.1|  462|Caenorhabditis elegans Hypothetical
           protein T22F7.5 protein.
          Length = 462

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 92  KACHGIYPLRDVCIRKVKVLKRPR 163
           K  HG  P +D C+  + + + PR
Sbjct: 279 KCAHGSSPYKDRCLNNINICEAPR 302


>AC006603-4|AAF39747.2|  379|Caenorhabditis elegans Hypothetical
           protein B0524.2 protein.
          Length = 379

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 23  VTNSELREVVNKLIPDSIAK 82
           V +  LR+VV K +PD +AK
Sbjct: 208 VISDRLRKVVEKFLPDDVAK 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,143,187
Number of Sequences: 27780
Number of extensions: 105991
Number of successful extensions: 366
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)