Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27o11
         (305 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   1.5  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   1.5  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    21   2.6  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    21   2.6  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    21   2.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   2.6  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   4.5  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   4.5  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    20   7.9  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    20   7.9  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    20   7.9  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 182 STSRSRNGASSTLSPFGCKHRAEGRCHGRPS 90
           S S+S+  + S++S    +  + G C  RPS
Sbjct: 22  SNSQSQRSSGSSISRNSNRSESSGYCGRRPS 52


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 182 STSRSRNGASSTLSPFGCKHRAEGRCHGRPS 90
           S S+S+  + S++S    +  + G C  RPS
Sbjct: 22  SNSQSQRSSGSSISRNSNRSESSGYCGRRPS 52


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 134 GCKHRAEGRC 105
           GC  R EGRC
Sbjct: 132 GCGERTEGRC 141


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 134 GCKHRAEGRC 105
           GC  R EGRC
Sbjct: 137 GCGERTEGRC 146


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 134 GCKHRAEGRC 105
           GC  R EGRC
Sbjct: 137 GCGERTEGRC 146


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 96  AFSMSLAMES-GINLFTTSLSSELVTSRVM 10
           A S+S   E  G +L  T+LSS LV SRV+
Sbjct: 599 ASSVSAGEEGLGNSLAITALSSILVLSRVI 628


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -2

Query: 112 VDAMAGLLDVLG 77
           V A+AGLL VLG
Sbjct: 300 VGALAGLLSVLG 311


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
 Frame = -1

Query: 149 TLSPFGCKHR-AEGRCHGR-PSRCPWQWSQEST 57
           T+ P GC    A+     R P R P+QW   ++
Sbjct: 401 TVDPAGCNAGPAKYYLKSRDPERTPYQWDNSTS 433


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 5/11 (45%), Positives = 7/11 (63%)
 Frame = +1

Query: 100 PWHLPSARCLH 132
           P+H P   C+H
Sbjct: 328 PYHTPEPDCIH 338


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 66  LTPLPRTSRRPAMASTLCAM 125
           L  LP    RPA  ++ CA+
Sbjct: 149 LNLLPMNRNRPAYLASKCAL 168


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -2

Query: 112 VDAMAGLLDVLGNGVRNQLVHHL 44
           +D +   ++VLG+G    +V+HL
Sbjct: 473 LDRIRTSINVLGDGYGAGIVYHL 495


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,659
Number of Sequences: 438
Number of extensions: 1353
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6493812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)