Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27o08
         (575 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74031-8|CAA98451.1|  372|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U10402-10|AAA19064.1|  355|Caenorhabditis elegans Gro-1 operon g...    28   5.5  
AY052770-1|AAL14109.1|  355|Caenorhabditis elegans GOP-2 protein.      28   5.5  
AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical ...    28   5.5  
Z82274-5|CAB05227.1|  333|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U41533-7|AAA83170.1|  337|Caenorhabditis elegans Small glutamine...    27   7.2  
AF192746-1|AAF08804.1|  401|Caenorhabditis elegans synapsin prot...    27   7.2  
AC006743-3|AAF60504.2|  401|Caenorhabditis elegans Synapsin prot...    27   7.2  
AC006743-2|AAM97971.1|  474|Caenorhabditis elegans Synapsin prot...    27   7.2  

>Z74031-8|CAA98451.1|  372|Caenorhabditis elegans Hypothetical
           protein F32D8.8 protein.
          Length = 372

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 17/70 (24%), Positives = 35/70 (50%)
 Frame = -2

Query: 340 SFSSSVWCTVGSVCSTYRIWSSSARPQFRETSRRVKFVVWPILNRFLSAYSSVVAA*KWP 161
           ++S+ V+ T  + CS  + +  +    +R  SRR K   W IL+  ++  S ++ A  + 
Sbjct: 126 NYSTLVYVTSTNKCSDLKYYFQN----YRNNSRRQKPAKWDILSELMTWNSEILGALSFS 181

Query: 160 STGAELNFTV 131
             G  L++ +
Sbjct: 182 FDGVSLHYAM 191


>U10402-10|AAA19064.1|  355|Caenorhabditis elegans Gro-1 operon gene
           protein 2 protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 171 RNGPRRERN*TLLSLGRLGAGSTPTVGRCTGATRVRKT 58
           + GP   +  ++L LG  G+G T  V R T     RKT
Sbjct: 22  QTGPNVNQKPSILVLGMAGSGKTTFVQRLTAFLHARKT 59


>AY052770-1|AAL14109.1|  355|Caenorhabditis elegans GOP-2 protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 171 RNGPRRERN*TLLSLGRLGAGSTPTVGRCTGATRVRKT 58
           + GP   +  ++L LG  G+G T  V R T     RKT
Sbjct: 22  QTGPNVNQKPSILVLGMAGSGKTTFVQRLTAFLHARKT 59


>AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical
           protein F25G6.9 protein.
          Length = 1373

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 125 GVLEQAQRRLSGGA-LGQHVFVKPILQLRRVGHLGAHE 15
           G+L  +Q+RL G   L Q+VF+K    L   GH   H+
Sbjct: 153 GLLSDSQKRLVGNCGLAQNVFLKHQPDLYPTGHESEHD 190


>Z82274-5|CAB05227.1|  333|Caenorhabditis elegans Hypothetical
           protein JC8.7 protein.
          Length = 333

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 333 EKLMKQELRPYRN-SGEVYCTDFEHIKRALETC 428
           +K  K E   YR+ S   YC + EH+ R+L  C
Sbjct: 216 KKNKKNERTGYRDLSKNAYCINIEHLVRSLRLC 248


>U41533-7|AAA83170.1|  337|Caenorhabditis elegans Small
           glutamine-rich tetratricorepeat protein protein 1
           protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
 Frame = -1

Query: 266 AAIQRNQSPRQVCSLAD----LEQIPFGVQQRRGRIEMALDGSGIKLYCRLGVLEQAQRR 99
           AAI+ N+ P   C+ A     LEQ    +Q  R    +ALD S  K + R+G+    Q R
Sbjct: 130 AAIKLNRDPVYFCNRAAAYCRLEQYDLAIQDCR--TALALDPSYSKAWGRMGLAYSCQNR 187

Query: 98  LSGGA 84
               A
Sbjct: 188 YEHAA 192


>AF192746-1|AAF08804.1|  401|Caenorhabditis elegans synapsin
           protein.
          Length = 401

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +2

Query: 26  QDDQRGGAAKLVLRTRVAPVHRPTVGVEPAPRRPSDSKV 142
           +DD+R  AA L+LR  VAP     +  EP    P+ S V
Sbjct: 284 EDDRR--AASLLLRALVAPRITSPIAAEPPATSPTTSAV 320


>AC006743-3|AAF60504.2|  401|Caenorhabditis elegans Synapsin protein
           1, isoform a protein.
          Length = 401

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +2

Query: 26  QDDQRGGAAKLVLRTRVAPVHRPTVGVEPAPRRPSDSKV 142
           +DD+R  AA L+LR  VAP     +  EP    P+ S V
Sbjct: 284 EDDRR--AASLLLRALVAPRITSPIAAEPPATSPTTSAV 320


>AC006743-2|AAM97971.1|  474|Caenorhabditis elegans Synapsin protein
           1, isoform b protein.
          Length = 474

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +2

Query: 26  QDDQRGGAAKLVLRTRVAPVHRPTVGVEPAPRRPSDSKV 142
           +DD+R  AA L+LR  VAP     +  EP    P+ S V
Sbjct: 357 EDDRR--AASLLLRALVAPRITSPIAAEPPATSPTTSAV 393


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,936,594
Number of Sequences: 27780
Number of extensions: 235445
Number of successful extensions: 787
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)