Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27o08
         (575 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   1.6  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    22   3.8  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    22   3.8  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   5.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   5.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   5.0  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = -1

Query: 533 EPF*FIKLNLFTTTRDDSTKARNKL----NGLVLRAVGQARLER 414
           EPF F+ L L     D   + R K+    N LVLR V QA  E+
Sbjct: 316 EPFPFLMLPLGADDPDSLRRKRQKINNSQNALVLRHV-QAEAEK 358


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
          protein.
          Length = 300

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 26 QDDQRGGAAKLVLRTRVAPVHR 91
          +D   GG A  + +T VAP+ R
Sbjct: 12 KDFLAGGVAAAISKTTVAPIER 33


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
          protein.
          Length = 300

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 26 QDDQRGGAAKLVLRTRVAPVHR 91
          +D   GG A  + +T VAP+ R
Sbjct: 12 KDFLAGGVAAAISKTTVAPIER 33


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 61  FTNTCCPSAPPDSR 102
           F+ +C P AP DS+
Sbjct: 530 FSGSCAPGAPLDSK 543


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 61  FTNTCCPSAPPDSR 102
           F+ +C P AP DS+
Sbjct: 530 FSGSCAPGAPLDSK 543


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 61  FTNTCCPSAPPDSR 102
           F+ +C P AP DS+
Sbjct: 530 FSGSCAPGAPLDSK 543


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,982
Number of Sequences: 438
Number of extensions: 2640
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)