Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27o02
         (563 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...   120   1e-28
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    29   0.36 
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce...    27   2.5  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    26   3.3  
SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    26   4.4  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    26   4.4  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    25   5.8  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score =  120 bits (289), Expect = 1e-28
 Identities = 64/139 (46%), Positives = 91/139 (65%), Gaps = 1/139 (0%)
 Frame = +3

Query: 147 GDEMFSDTYKMKLVDEVIYEVTGRLVTRAQG-DIQIEGFNPSAEEADEGTDSAVESGVDI 323
           GDE+ SD Y +K VD+++YE   ++VT  QG D+ I G NPSAE+A+E  +   E+  ++
Sbjct: 10  GDELVSDAYDLKEVDDIVYEADCQMVTVKQGGDVDI-GANPSAEDAEENAEEGTETVNNL 68

Query: 324 VLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFK 503
           V + RL  T +F DKKSY  Y+K YMK + A+L+E  P++V VF+ N    +K IL  FK
Sbjct: 69  VYSFRLSPT-SF-DKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIGFVKKILANFK 126

Query: 504 ELQFFTGESMDCDGMVAMM 560
           +  F+ GESMD D MV +M
Sbjct: 127 DYDFYIGESMDPDAMVVLM 145


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 29.5 bits (63), Expect = 0.36
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +3

Query: 315 VDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKT 461
           +D V  ++L+E   F ++K  T+YLK   + L  K +   PD VE   T
Sbjct: 89  IDEVSLNKLIEKVGFHNRK--TIYLKQMARILSEKFQGDIPDTVEDLMT 135


>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 262

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +3

Query: 222 VTRAQGDIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGD 365
           +T   G  Q + F PS  E +E TD+ ++  V  ++    V    F D
Sbjct: 6   LTEVWGKPQKDIFFPSGSEVEESTDAPIQRTVQPIVTGSSVLALKFAD 53


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 132 HFVENMITSDNVLIDLHFDGLEAIKNNKNRKNGF 31
           H  +++ T +  LI   +  +E+IK  KNR +GF
Sbjct: 506 HISDSLTTEELELILRQYGEIESIKYLKNRSSGF 539


>SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 19  LLR-REAVLSVFIIFNRLQSIKMKIYKDIITGNHIFYEMLLLILVM 153
           LLR RE ++     F+  ++  MK Y+D++   H F++ + L  VM
Sbjct: 154 LLRGREFMMKDLYTFDIDKASAMKTYEDVLQAYHTFFKEVGLPFVM 199


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 335 VVQDYVNSALDGRVRALVSLFSRRIKTLDLDIT 237
           V++D +NS LDG +  +    S R +T  LD++
Sbjct: 341 VLEDQMNSLLDGSLYGICRPLSSRAQTSVLDLS 373


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 515 ELKFLKPAEDVFHYFVHVCFKYFNLVR 435
           +  FLKP   ++ YF+ +  +Y +L+R
Sbjct: 175 QFDFLKPNNALYPYFMRIVQQYTSLIR 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,251,572
Number of Sequences: 5004
Number of extensions: 44338
Number of successful extensions: 122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)