Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27n22
         (522 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    28   0.97 
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    25   6.8  
SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|...    25   6.8  

>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -3

Query: 133 RSLSPSARAWQNTYSALYNVHSSAKRLLTNFSLPIIVRIVLSHL 2
           RSLS     W +  S +YN  SS + ++     P  VR+ L  L
Sbjct: 343 RSLSNDGNHWGSLSSTIYNPSSSPRTIVYFEKFPWFVRVYLHTL 386


>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +2

Query: 368 LRSV*MLDVVLHLPNS 415
           LRS  +LD+VLH PNS
Sbjct: 221 LRSDNILDIVLHYPNS 236


>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 492

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = +3

Query: 183 VYENSRRFEFINPDEIASGKRLIIKHLQDESQSDI 287
           ++E  RR++ +NP+ + S    ++  +QD  + +I
Sbjct: 124 IFEIGRRYKVLNPNRLGSTYGKLMYFVQDSMRPEI 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,085,192
Number of Sequences: 5004
Number of extensions: 40346
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)