Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27n22
         (522 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068709-2|AAC19251.2|  429|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical p...    28   4.7  
Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.      28   4.7  
U39653-2|AAM69064.1| 1092|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z68011-2|CAA92013.2|  381|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>AF068709-2|AAC19251.2|  429|Caenorhabditis elegans Hypothetical
           protein C24B9.3a protein.
          Length = 429

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 337 ITIMPCSLMDTEICLNVRCRSPFAKFKVLIIVDGFDSAYIQATF 468
           ++++  S   + ICL   C S   +  ++I+VD   +AY Q TF
Sbjct: 9   VSLLVASTSASHICLQTACSSFNVESDIVIVVDA-SNAYDQVTF 51


>Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical
            protein C02F4.1 protein.
          Length = 1781

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 107  LAKHVLGVVQCAQLGQTSPYKLFVANNCAN 18
            L++ +LGVV  A +G    Y++F    C N
Sbjct: 1540 LSRDILGVVSAAVMGGVKNYEVFFTEACRN 1569


>Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical protein
            C02F4.1 protein.
          Length = 1781

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 107  LAKHVLGVVQCAQLGQTSPYKLFVANNCAN 18
            L++ +LGVV  A +G    Y++F    C N
Sbjct: 1540 LSRDILGVVSAAVMGGVKNYEVFFTEACRN 1569


>AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.
          Length = 1781

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 107  LAKHVLGVVQCAQLGQTSPYKLFVANNCAN 18
            L++ +LGVV  A +G    Y++F    C N
Sbjct: 1540 LSRDILGVVSAAVMGGVKNYEVFFTEACRN 1569


>U39653-2|AAM69064.1| 1092|Caenorhabditis elegans Hypothetical
           protein T13H2.5b protein.
          Length = 1092

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/50 (26%), Positives = 28/50 (56%)
 Frame = -2

Query: 440 NPSTIINTLNLANGERHLTFKQISVSIKLHGIMVMRSTQLGSSSPFKLIG 291
           +PST++   NL+  ERH   +Q+  S +L  ++   ++   S +  +++G
Sbjct: 167 HPSTMLAMGNLSINERHNKVQQVLASQELQDLIARHTSGAVSQTQVEVVG 216


>U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical protein
            T13H2.5a protein.
          Length = 2471

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/50 (26%), Positives = 28/50 (56%)
 Frame = -2

Query: 440  NPSTIINTLNLANGERHLTFKQISVSIKLHGIMVMRSTQLGSSSPFKLIG 291
            +PST++   NL+  ERH   +Q+  S +L  ++   ++   S +  +++G
Sbjct: 1546 HPSTMLAMGNLSINERHNKVQQVLASQELQDLIARHTSGAVSQTQVEVVG 1595


>Z68011-2|CAA92013.2|  381|Caenorhabditis elegans Hypothetical
           protein T21B6.2 protein.
          Length = 381

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = +3

Query: 42  KFVRRRL-AELCTLYNAEYVFCQARADGDKDRQALASLLTAAFGPRVIVYENSRRFEFIN 218
           KF+RRR    +  +++ + +  ++ +D D+  +   S+ TA F P  +   N  +F F  
Sbjct: 68  KFLRRRYQGSVLPVFDRKKISIRS-SDADRAIETAQSVATALFPPDGLQVWNEEKFRFWQ 126

Query: 219 PDEI-ASGK 242
           P  I  +GK
Sbjct: 127 PIPIRTNGK 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,460,980
Number of Sequences: 27780
Number of extensions: 222593
Number of successful extensions: 517
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)