Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27n19
(613 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0409 - 20503480-20503678,20504522-20504717,20504805-205048... 263 9e-71
01_01_0745 + 5769150-5769152,5769268-5769375,5769812-5769854,576... 263 9e-71
05_02_0095 + 6564703-6564705,6564848-6564955,6565153-6565195,656... 199 1e-51
02_02_0195 + 7676014-7676094,7676111-7676218,7676307-7676349,767... 173 7e-44
02_02_0196 + 7685933-7685961,7686086-7686284 93 2e-19
03_01_0175 - 1413599-1413934,1414326-1414526,1414660-1414962 48 8e-06
11_04_0418 - 17443989-17444082,17445153-17445406,17445709-174457... 33 0.18
06_03_1403 + 29923503-29923821,29924269-29924405,29924495-299246... 32 0.31
01_01_0582 - 4317216-4317731 28 5.1
>06_03_0409 -
20503480-20503678,20504522-20504717,20504805-20504847,
20505632-20505739,20505848-20505850
Length = 182
Score = 263 bits (644), Expect = 9e-71
Identities = 125/166 (75%), Positives = 140/166 (84%)
Frame = +1
Query: 115 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 294
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 9 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIA 68
Query: 295 VHCTVRGAKAXEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLD 474
+ TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+D
Sbjct: 69 CYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMD 128
Query: 475 FYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDGIIL 612
FYVVL R G+ VA RRR +VG HR+TKEDAMKWFQ KY+G+IL
Sbjct: 129 FYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVIL 174
>01_01_0745 +
5769150-5769152,5769268-5769375,5769812-5769854,
5769945-5770140,5770836-5771034
Length = 182
Score = 263 bits (644), Expect = 9e-71
Identities = 125/166 (75%), Positives = 140/166 (84%)
Frame = +1
Query: 115 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 294
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 9 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIA 68
Query: 295 VHCTVRGAKAXEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLD 474
+ TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+D
Sbjct: 69 CYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMD 128
Query: 475 FYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDGIIL 612
FYVVL R G+ VA RRR +VG HR+TKEDAMKWFQ KY+G+IL
Sbjct: 129 FYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVIL 174
>05_02_0095 +
6564703-6564705,6564848-6564955,6565153-6565195,
6565303-6565409,6566310-6566395,6566396-6566594
Length = 181
Score = 199 bits (486), Expect = 1e-51
Identities = 104/168 (61%), Positives = 122/168 (72%), Gaps = 2/168 (1%)
Frame = +1
Query: 115 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 294
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 9 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIA 68
Query: 295 VHCTVRGAKAXEILERGLKVREYELRRDNF--SATGNFGFGIQEHIDLGIKYDPSIGIYG 468
+ TVRG KA ++LE GLK+ DN S T + + +YDPS GIYG
Sbjct: 69 CYVTVRGEKAMQLLESGLKIIRIV---DNLIPSVTRSTRAKRINLSNQCFRYDPSTGIYG 125
Query: 469 LDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDGIIL 612
+DFYVVL R G+ VA RRR +VG HR+TKEDAMKWFQ KY+G+IL
Sbjct: 126 MDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVIL 173
>02_02_0195 +
7676014-7676094,7676111-7676218,7676307-7676349,
7676449-7676648
Length = 143
Score = 173 bits (422), Expect = 7e-44
Identities = 85/109 (77%), Positives = 94/109 (86%)
Frame = +1
Query: 115 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 294
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 35 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 94
Query: 295 VHCTVRGAKAXEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIK 441
+ TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIK
Sbjct: 95 CYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 143
>02_02_0196 + 7685933-7685961,7686086-7686284
Length = 75
Score = 92.7 bits (220), Expect = 2e-19
Identities = 40/57 (70%), Positives = 46/57 (80%)
Frame = +1
Query: 442 YDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDGIIL 612
YDPS GIYG+DFYVVL R G+ VA RRR +VG HR+TKEDAMKWFQ KY+G+IL
Sbjct: 11 YDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVIL 67
>03_01_0175 - 1413599-1413934,1414326-1414526,1414660-1414962
Length = 279
Score = 47.6 bits (108), Expect = 8e-06
Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 10/134 (7%)
Frame = +1
Query: 115 NVMRNLHIRKLCLNICVG-ESGDR--LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNE 285
NV + + K+ +N +G E+G+ L A K L +TGQ PV +KA+ +V SF IR
Sbjct: 98 NVHQVPKVEKIVVNCGLGAEAGNSKGLESAMKDLAMITGQWPVKTKAKKSVASFKIREGN 157
Query: 286 KIAVHCTVRGAKAXEILER----GL-KVREY-ELRRDNFSATGNFGFGIQEH-IDLGIKY 444
I + T+RG L+R GL + ++ + ++F GNF G+++ + I Y
Sbjct: 158 TIGIAVTLRGRVMFNFLDRLINLGLPRTMDFLGVNPNSFDGHGNFTIGLRDQGVFPEIPY 217
Query: 445 DPSIGIYGLDFYVV 486
+ G+D +V
Sbjct: 218 EVGGKKNGMDVCIV 231
>11_04_0418 -
17443989-17444082,17445153-17445406,17445709-17445783,
17446156-17446377,17446789-17446941,17447031-17447167,
17447615-17447933
Length = 417
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +1
Query: 283 EKIAVHCTVRGAKAXEILERGLK 351
EKIA + TVRG KA ++LE GLK
Sbjct: 280 EKIACYVTVRGEKAMQLLESGLK 302
>06_03_1403 +
29923503-29923821,29924269-29924405,29924495-29924647,
29924690-29925280,29925523-29925597,29925901-29926169,
29927238-29927331
Length = 545
Score = 32.3 bits (70), Expect = 0.31
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +1
Query: 283 EKIAVHCTVRGAKAXEILERGLK 351
EKIA + TVRG KA ++LE GLK
Sbjct: 403 EKIACYVTVRGEKAMQLLEIGLK 425
>01_01_0582 - 4317216-4317731
Length = 171
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = -3
Query: 278 RRIPKDRTVYLALENTGCCPVSCSNTLAARVSLSPDSPTQMF 153
RRI ++ + L TGC P S S AARV S Q F
Sbjct: 98 RRILRENKKRILLCATGCVPASSSAAAAARVPYDAYSYAQNF 139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,019,426
Number of Sequences: 37544
Number of extensions: 346932
Number of successful extensions: 899
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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