Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27n18
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom...    29   0.82 
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac...    28   1.4  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   4.4  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.8  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    26   5.8  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    26   5.8  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    25   7.7  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    25   7.7  

>SPBC14F5.08 |med7||mediator complex subunit
           Med7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
 Frame = +1

Query: 391 QRRHEKRQVWISAT-----AELRDTYMDQDGNMQFQGYLLEEITSKTQQQIFTNETSTET 555
           Q +HE+ QV +  T      E  + Y   D NM+ +G +++++ S  ++ +   E   ++
Sbjct: 290 QLKHEESQVELLRTHNRQMTETLEKYKSLDFNMEKEGDVIQQLKSSIKKPLSGAEDEQKS 349

Query: 556 LTRILENFAELKK 594
            +   +N  +LKK
Sbjct: 350 RSMFSKNDEKLKK 362


>SPBC8D2.19 |mde3||serine/threonine protein kinase
           Mde3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 559

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = +1

Query: 436 ELRDTYMDQDGN----MQFQGYLLEEITSKTQQQIFTNETSTETLTRILENFAELKK 594
           +L +T+MD   N    M+F    L ++  + Q ++FT ET+   L +I+     + K
Sbjct: 87  DLLETFMDPYRNIFLVMEFMDCNLFQLFKRRQGRLFTKETAFNILLQIISGIEHIHK 143


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = -3

Query: 299 FFSVSVIEVIQITFVFGSSPGFTINSNFNLSIVSKSFNQCCFVMCFVMKQ 150
           FF   V  +  + ++  + P      +    IV K   +C F MCF  K+
Sbjct: 278 FFMAQVKTLSFLAYILRTHPNTLSEKDIIPDIVIKLLRRCPFDMCFARKE 327


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
 Frame = +1

Query: 274 TSITDTEKNVFLMPEKLQPVKL-HDAVIKTQTFQKVKATLQRRHEK--RQVWISATAELR 444
           T +T   + VF +PE L+P+K    ++ K +   K+   L+ + +   +  ++ A +++R
Sbjct: 48  TIVTFATQEVFYLPEGLEPLKRDFSSMDKLKLIGKITYKLRLKGDTALKFAYLHAPSDVR 107

Query: 445 DTYMD 459
           D   D
Sbjct: 108 DKVFD 112


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
            Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/57 (21%), Positives = 24/57 (42%)
 Frame = +1

Query: 271  ITSITDTEKNVFLMPEKLQPVKLHDAVIKTQTFQKVKATLQRRHEKRQVWISATAEL 441
            + S+      +   P+ L+   LH+ VI  QT  K      +  +   +W+ A  ++
Sbjct: 900  VKSVKIKGMTIIKAPDALKNANLHNEVIVMQTTDKPIVLKAKSKKIHNIWVQAIKQI 956


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 490 LLEEITSKTQQQIFTNETSTETLTRILENFAELK 591
           L+EEI S     +  N   TET  +++ENF E+K
Sbjct: 385 LMEEIKS-----VNDNRYITETSNKVMENFTEIK 413


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 41/183 (22%), Positives = 73/183 (39%), Gaps = 3/183 (1%)
 Frame = +1

Query: 64  RLKKTCRLKKG*SNIFQCCFSLQSNNLVLCFITKHITKQH*LKLLETMD--KLKFEFIVK 237
           R  K CR KK   N  Q C S ++ N+   +  K   K    + LE +   +L  E+I  
Sbjct: 37  RACKHCRQKKIKCNGGQPCISCKTLNIECVYAQKSQNKTLSREYLEELSERQLCLEYIFS 96

Query: 238 PGEDPKTNVICITSITDTEKNVFLMPEKLQPVKLHDAVIKTQTFQKVKATLQRRHEKRQV 417
               P  N+     I+ ++K      E L   K+ +   +  T  ++   L R H     
Sbjct: 97  -RMCPNFNLETKNLISISKK--LSENENLPVSKIAEVTNELDTLVRINDQLSRNHIS--- 150

Query: 418 WISATAELRDTYMDQDGNMQFQGYLLEEI-TSKTQQQIFTNETSTETLTRILENFAELKK 594
               T E++ +     G +Q      +++   K +  ++   T++E     L+N  EL+ 
Sbjct: 151 --GTTEEMQSSSSLIAGEVQPGISFRDQLKVGKLEDTLYLGPTTSEAFIERLQNELELES 208

Query: 595 ESK 603
            S+
Sbjct: 209 ISE 211


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 662 VFFVNFSITNISDICFKLNCLDSFF 588
           V FVNF  T ISD+   +  L S F
Sbjct: 370 VGFVNFDFTRISDVALLIIALYSIF 394


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,700,754
Number of Sequences: 5004
Number of extensions: 54210
Number of successful extensions: 182
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)