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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27n18
         (682 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical pr...    31   0.58 
Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical pr...    31   0.58 
AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein.       31   0.58 
Z74034-4|CAE17842.2|  319|Caenorhabditis elegans Hypothetical pr...    31   0.76 
Z81457-5|CAB03817.2|  584|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr...    30   1.8  
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch...    30   1.8  
AL023842-7|CAA19518.3|  345|Caenorhabditis elegans Hypothetical ...    30   1.8  
AB108783-1|BAC75705.1|  345|Caenorhabditis elegans SDF-9 protein...    30   1.8  
U40417-13|AAA81420.1| 1330|Caenorhabditis elegans Hypothetical p...    29   3.1  
Z81042-3|CAB02794.2|  660|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AL132876-9|CAD21661.1|  959|Caenorhabditis elegans Hypothetical ...    28   5.4  
U39472-7|AAP86620.2|  339|Caenorhabditis elegans Serpentine rece...    28   7.1  
AF003150-4|AAB54217.1|  381|Caenorhabditis elegans Hypothetical ...    28   7.1  
AC024799-8|AAW88387.1|  297|Caenorhabditis elegans Hypothetical ...    28   7.1  
AC024799-7|AAW88388.1|  295|Caenorhabditis elegans Hypothetical ...    28   7.1  
Z83230-8|CAC42303.1|  291|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z83230-7|CAB05747.1|  291|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z81553-7|CAB04496.4|  797|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U28943-8|AAK68293.1|  325|Caenorhabditis elegans Serpentine rece...    27   9.4  
AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical...    27   9.4  
AF047885-1|AAD10538.1|  291|Caenorhabditis elegans UNC-64 syntax...    27   9.4  
AB008844-1|BAA23586.1|  291|Caenorhabditis elegans syntaxin C pr...    27   9.4  
AB008843-1|BAA23585.1|  291|Caenorhabditis elegans syntaxin B pr...    27   9.4  
AB008842-1|BAA23584.1|  291|Caenorhabditis elegans syntaxin A pr...    27   9.4  

>Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical protein
            T10G3.5b protein.
          Length = 1203

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 25/130 (19%), Positives = 52/130 (40%)
 Frame = +1

Query: 289  TEKNVFLMPEKLQPVKLHDAVIKTQTFQKVKATLQRRHEKRQVWISATAELRDTYMDQDG 468
            TE N F+   K+Q  K+ + + + Q  Q+V+  +    +K   W +   E     +    
Sbjct: 691  TESNSFIEELKVQVEKVSNEISEKQ--QEVENLMAEMRDKEAHWKTKRDEFEAQMLRNQE 748

Query: 469  NMQFQGYLLEEITSKTQQQIFTNETSTETLTRILENFAELKKESKQFNLKQISEMFVIEK 648
            + +     L+ +  +  ++  T+      L  +     ELK E ++    +  +   IEK
Sbjct: 749  DNEEASSTLKSVQEQLMKEKETSGEEKNQLISVKSQLEELKTEVERLIRSEEEKTQEIEK 808

Query: 649  FTKKTSSVTQ 678
                 ++ TQ
Sbjct: 809  LKSAVTATTQ 818


>Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical protein
            T10G3.5a protein.
          Length = 1205

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 25/130 (19%), Positives = 52/130 (40%)
 Frame = +1

Query: 289  TEKNVFLMPEKLQPVKLHDAVIKTQTFQKVKATLQRRHEKRQVWISATAELRDTYMDQDG 468
            TE N F+   K+Q  K+ + + + Q  Q+V+  +    +K   W +   E     +    
Sbjct: 693  TESNSFIEELKVQVEKVSNEISEKQ--QEVENLMAEMRDKEAHWKTKRDEFEAQMLRNQE 750

Query: 469  NMQFQGYLLEEITSKTQQQIFTNETSTETLTRILENFAELKKESKQFNLKQISEMFVIEK 648
            + +     L+ +  +  ++  T+      L  +     ELK E ++    +  +   IEK
Sbjct: 751  DNEEASSTLKSVQEQLMKEKETSGEEKNQLISVKSQLEELKTEVERLIRSEEEKTQEIEK 810

Query: 649  FTKKTSSVTQ 678
                 ++ TQ
Sbjct: 811  LKSAVTATTQ 820


>AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein.
          Length = 1205

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 25/130 (19%), Positives = 52/130 (40%)
 Frame = +1

Query: 289  TEKNVFLMPEKLQPVKLHDAVIKTQTFQKVKATLQRRHEKRQVWISATAELRDTYMDQDG 468
            TE N F+   K+Q  K+ + + + Q  Q+V+  +    +K   W +   E     +    
Sbjct: 693  TESNSFIEELKVQVEKVSNEISEKQ--QEVENLMAEMRDKEAHWKTKRDEFEAQMLRNQE 750

Query: 469  NMQFQGYLLEEITSKTQQQIFTNETSTETLTRILENFAELKKESKQFNLKQISEMFVIEK 648
            + +     L+ +  +  ++  T+      L  +     ELK E ++    +  +   IEK
Sbjct: 751  DNEEASSTLKSVQEQLMKEKETSGEEKNQLISVKSQLEELKTEVERLIRSEEEKTQEIEK 810

Query: 649  FTKKTSSVTQ 678
                 ++ TQ
Sbjct: 811  LKSAVTATTQ 820


>Z74034-4|CAE17842.2|  319|Caenorhabditis elegans Hypothetical
           protein F43A11.3 protein.
          Length = 319

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 24/57 (42%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = -3

Query: 323 NFSGIKNTFFSVSVIE-VIQITF-VFGSSPGFTINSNFNLSIVSKSFNQCCFVMCFV 159
           NF+ I N   SV+VI  V    F +FG    F I S F  S    SFN  CF   FV
Sbjct: 4   NFTVIYNYQNSVNVISAVFNFVFGIFGVICNFNIISIFLTSTERTSFNLICFSRAFV 60


>Z81457-5|CAB03817.2|  584|Caenorhabditis elegans Hypothetical
           protein C01G12.7 protein.
          Length = 584

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -3

Query: 659 FFVNFSITNISDICFKLNCLDSFFNSAKFSRILVRVSVEVSLVKICCCVFDV 504
           FF   S  N  D C ++ C  S   SA F+ +L RV + + ++ I   +F V
Sbjct: 252 FFQCDSHINSQDQCIQIVCAVSNIFSAIFTELLTRVRIVIIVIIILLILFSV 303


>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical protein
            K12F2.1 protein.
          Length = 1969

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 31/138 (22%), Positives = 58/138 (42%)
 Frame = +1

Query: 217  KFEFIVKPGEDPKTNVICITSITDTEKNVFLMPEKLQPVKLHDAVIKTQTFQKVKATLQR 396
            K E  V+ GE  ++ +    +    EKN   +  + +   L DA  + +   ++KATL+ 
Sbjct: 871  KLEEAVQRGEIARSQLESQVADLVEEKNALFLSLETEKANLADAEERNEKLNQLKATLES 930

Query: 397  RHEKRQVWISATAELRDTYMDQDGNMQFQGYLLEEITSKTQQQIFTNETSTETLTRILEN 576
            +          T +L D        MQ +   L     KT Q++   +   + L   L  
Sbjct: 931  KLS------DITGQLED--------MQERNEDLARQKKKTDQELSDTKKHVQDLELSLRK 976

Query: 577  FAELKKESKQFNLKQISE 630
             AE +K+S+  N++ + +
Sbjct: 977  -AEQEKQSRDHNIRSLQD 993


>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain 3
            protein.
          Length = 1969

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 31/138 (22%), Positives = 58/138 (42%)
 Frame = +1

Query: 217  KFEFIVKPGEDPKTNVICITSITDTEKNVFLMPEKLQPVKLHDAVIKTQTFQKVKATLQR 396
            K E  V+ GE  ++ +    +    EKN   +  + +   L DA  + +   ++KATL+ 
Sbjct: 871  KLEEAVQRGEIARSQLESQVADLVEEKNALFLSLETEKANLADAEERNEKLNQLKATLES 930

Query: 397  RHEKRQVWISATAELRDTYMDQDGNMQFQGYLLEEITSKTQQQIFTNETSTETLTRILEN 576
            +          T +L D        MQ +   L     KT Q++   +   + L   L  
Sbjct: 931  KLS------DITGQLED--------MQERNEDLARQKKKTDQELSDTKKHVQDLELSLRK 976

Query: 577  FAELKKESKQFNLKQISE 630
             AE +K+S+  N++ + +
Sbjct: 977  -AEQEKQSRDHNIRSLQD 993


>AL023842-7|CAA19518.3|  345|Caenorhabditis elegans Hypothetical
           protein Y44A6D.4 protein.
          Length = 345

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +1

Query: 403 EKRQVWISATAEL-RDTYMDQDGNMQFQGYLLEEITSKTQQQIFTNETSTETLTRILENF 579
           +K  VW     ++ R +Y    GN   + ++L +     +   FT    TET T I+++F
Sbjct: 121 DKGDVWSYGHLQVERKSYAIHQGNFHTRNFILRKGNETHRVLHFTVFGWTETTTPIMQDF 180

Query: 580 AELKKESK 603
             L+K  K
Sbjct: 181 LALRKVMK 188


>AB108783-1|BAC75705.1|  345|Caenorhabditis elegans SDF-9 protein
           protein.
          Length = 345

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +1

Query: 403 EKRQVWISATAEL-RDTYMDQDGNMQFQGYLLEEITSKTQQQIFTNETSTETLTRILENF 579
           +K  VW     ++ R +Y    GN   + ++L +     +   FT    TET T I+++F
Sbjct: 121 DKGDVWSYGHLQVERKSYAIHQGNFHTRNFILRKGNETHRVLHFTVFGWTETTTPIMQDF 180

Query: 580 AELKKESK 603
             L+K  K
Sbjct: 181 LALRKVMK 188


>U40417-13|AAA81420.1| 1330|Caenorhabditis elegans Hypothetical
            protein T08A9.1 protein.
          Length = 1330

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 36/165 (21%), Positives = 69/165 (41%), Gaps = 3/165 (1%)
 Frame = +1

Query: 193  LLETMDKLKFEFIVKPGEDPKTNVICITSITDTEKNVFLMPEKLQPVKLHDAVIKTQTFQ 372
            + E   +L  E  +    D   +++ +    D      L+      V+L DAV +    Q
Sbjct: 668  MTENKSELNLESNMNDSNDSIDSLLDVYEHIDYSAEDILLGLSDHTVQLEDAVKRLSKMQ 727

Query: 373  KVKATLQRRHEKRQVWISATAELRDTYMDQDGN-MQFQGYLLEEITSKTQQQIFTNETST 549
             + A +  R+EK   ++  TA      +  DG+ ++ +   L E     + ++  N+ ST
Sbjct: 728  NIVANMTPRNEKLFKYLHQTAPRDFEIIIHDGDKLKNRVKELGESVESLETEL-ENKKST 786

Query: 550  ET--LTRILENFAELKKESKQFNLKQISEMFVIEKFTKKTSSVTQ 678
            E+    ++ E     KKE +    + I  M V  +F   T S+++
Sbjct: 787  ESNLEAKLAEMTVSHKKEIENTQAECIKRMSV--EFELMTDSMSR 829


>Z81042-3|CAB02794.2|  660|Caenorhabditis elegans Hypothetical
           protein C27H6.3 protein.
          Length = 660

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
 Frame = +1

Query: 421 ISATAELRDTYMDQDGNMQFQGYLLEEITSKTQQQIFTNETSTETLTRILENFAELKKE- 597
           ++A  E  D+Y D +    F G+ L EI     +  F N+   E     LEN  EL+ + 
Sbjct: 1   MAALFEENDSYSDSENEEDFSGF-LSEIEENENEDEFENDDEFEDDDE-LENVDELEDDE 58

Query: 598 --SKQFNLKQISEMFV 639
             S++ ++   +E+ V
Sbjct: 59  LSSEEVDIPSENEVIV 74


>AL132876-9|CAD21661.1|  959|Caenorhabditis elegans Hypothetical
           protein Y105E8A.10a protein.
          Length = 959

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/60 (20%), Positives = 28/60 (46%)
 Frame = +1

Query: 286 DTEKNVFLMPEKLQPVKLHDAVIKTQTFQKVKATLQRRHEKRQVWISATAELRDTYMDQD 465
           + +KN+  +  + Q ++ HD   K + F+ ++         R+  +   AEL D ++  +
Sbjct: 8   EKKKNILRLNIRCQRLREHDNTAKIELFKSMRRRRSSTKASRKTTMGGAAELEDEWIPSE 67


>U39472-7|AAP86620.2|  339|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 35 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = -3

Query: 401 CLLCNVAFTF*KVWVFITASCSFT---GCNFSGIKNTFFSVSVIEVIQ 267
           CLL N+   F    +F ++  SF      NF  +KN+ F+VS+I V Q
Sbjct: 198 CLLANLTIIF---SIFKSSKKSFNLKIRFNFQEVKNSSFAVSLISVFQ 242


>AF003150-4|AAB54217.1|  381|Caenorhabditis elegans Hypothetical
           protein T05E7.5 protein.
          Length = 381

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = +1

Query: 493 LEEITSKTQQQIFTNETSTETLTRILENFAELKKESKQFNLK--QISEMFVIEKFTKKTS 666
           L+E+ + T+      E + +  +  L  + E +KE +QFNLK  ++   F  E+ + +T+
Sbjct: 284 LDEMKNGTKALKHELEETKKMKSEALSKYEESQKEFEQFNLKFQRLCTKFYEERVSSQTT 343

Query: 667 S 669
           S
Sbjct: 344 S 344


>AC024799-8|AAW88387.1|  297|Caenorhabditis elegans Hypothetical
           protein Y49C4A.2 protein.
          Length = 297

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
 Frame = -3

Query: 386 VAFTF*KVWVFITASCSFTGCNFSGIKNTFFSVS---VIEVIQITFVFGSSPGFTINSNF 216
           V F F    + I ++C F GC  +   N+F+SV    +   I I  +  ++  F +N +F
Sbjct: 140 VLFGFCSYQMEIPSTCRFFGCAINTCFNSFWSVHRTIIFTTIVILSILLAAKLFILN-HF 198

Query: 215 NLSIVSKSFNQ 183
            L + +K  ++
Sbjct: 199 QLGVTNKMLSK 209


>AC024799-7|AAW88388.1|  295|Caenorhabditis elegans Hypothetical
           protein Y49C4A.3 protein.
          Length = 295

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = -3

Query: 386 VAFTF*KVWVFITASCSFTGCNFSGIKNTFFSV--SVIEVIQITFVFGSSPGFTINSNFN 213
           V F F    + I + C F GC  +   NTF+S   ++I  I I      S    I ++F 
Sbjct: 143 VLFGFCSYKMEIPSMCRFFGCAINTCFNTFWSAHRTIIFTIIINLSILLSVKLFILNHFQ 202

Query: 212 LSIVSKSFNQ 183
           L + +K  ++
Sbjct: 203 LGVTNKMLSE 212


>Z83230-8|CAC42303.1|  291|Caenorhabditis elegans Hypothetical
           protein F56A8.7b protein.
          Length = 291

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +1

Query: 349 VIKTQTFQKVKATLQRRHEKRQVWISATAELRDTYMDQDGNMQFQGYLLEEI 504
           +  TQ  ++  A ++ RH       S+  EL D +MD    ++ QG +++ I
Sbjct: 183 ITDTQQAKQTLADIEARHNDIMKLESSIRELHDMFMDMAMLVESQGEMVDRI 234


>Z83230-7|CAB05747.1|  291|Caenorhabditis elegans Hypothetical
           protein F56A8.7a protein.
          Length = 291

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +1

Query: 349 VIKTQTFQKVKATLQRRHEKRQVWISATAELRDTYMDQDGNMQFQGYLLEEI 504
           +  TQ  ++  A ++ RH       S+  EL D +MD    ++ QG +++ I
Sbjct: 183 ITDTQQAKQTLADIEARHNDIMKLESSIRELHDMFMDMAMLVESQGEMVDRI 234


>Z81553-7|CAB04496.4|  797|Caenorhabditis elegans Hypothetical
           protein F56H6.7 protein.
          Length = 797

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/71 (22%), Positives = 33/71 (46%)
 Frame = +1

Query: 418 WISATAELRDTYMDQDGNMQFQGYLLEEITSKTQQQIFTNETSTETLTRILENFAELKKE 597
           W+   A++ + Y+D   NM   G+   ++   T     TNET+ +   R +    +L K 
Sbjct: 385 WLEDDAKMMEMYLDDLKNM---GFEFPKLIDNTDYSPSTNETTRDVNCRRMHLEFDLLKP 441

Query: 598 SKQFNLKQISE 630
            +  ++K+  +
Sbjct: 442 RENQSIKRAEQ 452


>U28943-8|AAK68293.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 58 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = -3

Query: 314 GIKNTFFSVSVIEVIQITFVFGSSPGFTINSNFNLSIVSKSFNQCCFV---MCFV 159
           G+K   ++ S +++  ITF F S      NSN   S    S   C +V   +CF+
Sbjct: 44  GLKIFLYNTSCVQIALITFAFLSQHRLLTNSN---SAAVLSLGPCSYVSPKLCFI 95


>AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical
           protein Y51A2D.15 protein.
          Length = 1222

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +1

Query: 463 DGNMQFQGYLLEEITSKTQQQIFTNETSTETLTRILENFAELKK-ESKQFNLKQISEMFV 639
           DGNM+  G  LEE++++ +      + + + L      F E +  +S+    K   E+  
Sbjct: 493 DGNMERIGIELEEMSAQVENLNLERDEAVKQLLEARRKFGEFQMGQSRDLEEKWSKEVEK 552

Query: 640 IEKFTKK 660
             K +KK
Sbjct: 553 SNKISKK 559


>AF047885-1|AAD10538.1|  291|Caenorhabditis elegans UNC-64 syntaxin
           class B protein.
          Length = 291

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +1

Query: 349 VIKTQTFQKVKATLQRRHEKRQVWISATAELRDTYMDQDGNMQFQGYLLEEI 504
           +  TQ  ++  A ++ RH       S+  EL D +MD    ++ QG +++ I
Sbjct: 183 ITDTQQAKQTLADIEARHNDIMKLESSIRELHDMFMDMAMLVESQGEMVDRI 234


>AB008844-1|BAA23586.1|  291|Caenorhabditis elegans syntaxin C
           protein.
          Length = 291

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +1

Query: 349 VIKTQTFQKVKATLQRRHEKRQVWISATAELRDTYMDQDGNMQFQGYLLEEI 504
           +  TQ  ++  A ++ RH       S+  EL D +MD    ++ QG +++ I
Sbjct: 183 ITDTQQAKQTLADIEARHNDIMKLESSIRELHDMFMDMAMLVESQGEMVDRI 234


>AB008843-1|BAA23585.1|  291|Caenorhabditis elegans syntaxin B
           protein.
          Length = 291

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +1

Query: 349 VIKTQTFQKVKATLQRRHEKRQVWISATAELRDTYMDQDGNMQFQGYLLEEI 504
           +  TQ  ++  A ++ RH       S+  EL D +MD    ++ QG +++ I
Sbjct: 183 ITDTQQAKQTLADIEARHNDIMKLESSIRELHDMFMDMAMLVESQGEMVDRI 234


>AB008842-1|BAA23584.1|  291|Caenorhabditis elegans syntaxin A
           protein.
          Length = 291

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +1

Query: 349 VIKTQTFQKVKATLQRRHEKRQVWISATAELRDTYMDQDGNMQFQGYLLEEI 504
           +  TQ  ++  A ++ RH       S+  EL D +MD    ++ QG +++ I
Sbjct: 183 ITDTQQAKQTLADIEARHNDIMKLESSIRELHDMFMDMAMLVESQGEMVDRI 234


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,936,080
Number of Sequences: 27780
Number of extensions: 307261
Number of successful extensions: 971
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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