Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27n18
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    25   0.88 
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    21   8.2  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   8.2  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   8.2  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   8.2  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   8.2  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 271 ITSITDTEKNVFLMPEKLQPVKLHDAVIKTQTF 369
           I  + + +KN    P+KL+ +KL D++I  Q F
Sbjct: 271 INMLMELQKN----PQKLENIKLTDSLIAAQAF 299


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +3

Query: 270 YNLNNRYRKKCVLNAGKI 323
           YN NN Y KK   N   I
Sbjct: 96  YNNNNNYNKKLYYNINYI 113


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
 Frame = +1

Query: 538 ETSTETLTRILENFAEL--KKESKQF--NLKQISEMFVIE 645
           ET TET TR+     +L  K    ++  N K++ E  + E
Sbjct: 234 ETETETWTRVFNTLVDLVPKHACAEYRRNFKKMQEEKIFE 273


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 546 DGNSYKNPGK 575
           DGNSY+N G+
Sbjct: 241 DGNSYRNDGE 250


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +3

Query: 270 YNLNNRYRKKCVLNAGKI 323
           YN NN Y KK   N   I
Sbjct: 334 YNNNNNYNKKLYYNINYI 351


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +2

Query: 428 QQQNYVTLTWTKTEICSSKDI 490
           QQ+N +   WTK+++  S+ +
Sbjct: 443 QQRNILNTFWTKSDVDLSRGL 463


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,776
Number of Sequences: 438
Number of extensions: 4160
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)