Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27n17
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.15c |||ribonuclease H2 complex subunit|Schizosaccharom...    29   0.69 
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    28   1.2  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    25   6.4  
SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces po...    25   6.4  
SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans...    25   6.4  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    25   8.5  
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    25   8.5  

>SPAC12B10.15c |||ribonuclease H2 complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 77  CHIWFDTPAPFFSRYHTQTQ 136
           CHI +D PAP F  +H + Q
Sbjct: 26  CHISYDGPAPVFEYFHDKIQ 45


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 173 HIQKIQEPFIDKPPKLQNTLLLTARHSTH 259
           ++QK  +P  DK P   N L+L A   TH
Sbjct: 647 YLQKSMQPQFDKSPLFWNALILDAFSGTH 675


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +2

Query: 173 HIQKIQEPFIDKPPKLQNTLLLTARHSTHPTVAK-ERSDFVACP 301
           H QK + P     P++QNT      H THP   +   SDF + P
Sbjct: 274 HQQK-KTPQSGSTPQMQNTTSQPTTHDTHPPKQQGPISDFRSIP 316


>SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 450

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 319 TVESQTRAGDEIASFLRYC 263
           T+E   +AG +I SFL YC
Sbjct: 136 TIEEVHKAGGKIKSFLSYC 154


>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
           transporter Hut1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +2

Query: 401 NFIIQYLSVFD--FLFARTPSVGMLFLFF 481
           +FI ++ S+     LFA T SVG LF+FF
Sbjct: 226 SFINRHPSILKDMLLFACTGSVGQLFIFF 254


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 15/62 (24%), Positives = 25/62 (40%)
 Frame = -2

Query: 472  EKHTNTGCTRKKKIKHRQILNDKVIYLQNSNKNKLFELSGLSLKSCRHDFVTVESQTRAG 293
            E  T T  T  K++K  +  ND +  + N ++NK   ++    K           +  A 
Sbjct: 893  EAATKTASTLSKELKTVKSENDSLKSVSNDDQNKEKSVNNEKFKEVSQALAEANEKLNAR 952

Query: 292  DE 287
            DE
Sbjct: 953  DE 954


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 399 ITLSFNICLCLIF 437
           IT+  N+CLCL F
Sbjct: 42  ITIGLNVCLCLFF 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,326,334
Number of Sequences: 5004
Number of extensions: 45913
Number of successful extensions: 125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)