Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27n16
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||...    37   0.002
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   2.2  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    26   3.9  
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    25   6.8  
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    25   9.0  

>SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 224

 Score = 36.7 bits (81), Expect = 0.002
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = +2

Query: 392 TATVIFFHGSGSTGADIKEWVRLMVEQFSFPHVKVLFPTAP 514
           TATVIF HG G +G   + W  +     +F H+K +FP AP
Sbjct: 17  TATVIFLHGLGDSG---QGWSFMANTWSNFKHIKWIFPNAP 54


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 248  YDQKKELSIPNYI**IRTYLPETSITINFNKMSKLGAL 361
            YD   ++  P Y+  ++TY PE    I F+  S L  L
Sbjct: 1861 YDTPAKIVTPVYVSILKTYQPEVRAFIEFSLASLLSVL 1898


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +2

Query: 314 TSITINFNKMSKLGALHITKHSGA---KQTATVIFFHGSGSTGADIKEWVRLMVEQF 475
           +S  ++ NK+ K GAL I++   A      +T+     S  TG D  E+ RL+  ++
Sbjct: 446 SSSQVSKNKLDKFGALTISELKNAVLSSIVSTIQIEPNSDLTGYDYYEYKRLLYNEW 502


>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 173 LMKLDRL*EATILVLFIYPTYNLIKYDQKK 262
           L KLD L + ++  LFI P+   +KY + K
Sbjct: 409 LQKLDNLKDLSVQELFIIPSERELKYYELK 438


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 513 GAVGNKTFTCGKENCSTINLTHSLISAPVD 424
           G+  +  F   K+NC T  LT + +  P D
Sbjct: 388 GSAKSSNFCSSKDNCLTNRLTLNCLDTPSD 417


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,953,612
Number of Sequences: 5004
Number of extensions: 38185
Number of successful extensions: 68
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)