Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27n14
         (541 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    28   0.77 
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    27   2.3  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    27   2.3  
SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces pom...    25   5.4  
SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual     25   9.5  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    25   9.5  

>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +2

Query: 245 MSPTYAMYFRAFRTLK*THCAGCGAWTACQTFVTTPN 355
           M  T +MYF A + LK    AG    + CQ     PN
Sbjct: 125 MLSTLSMYFEALKFLKHNPVAGKPVQSGCQVLFIVPN 161


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = +1

Query: 100 TSTPAG-FTNVLNAPSVRNLGNNRYQPGYQLSNN--RFVSTSDINRITRNNDVPNIRNVF 270
           T TP    +N LN+  V N    +  P    S+N  RF  TS+ + I  + + P   +V+
Sbjct: 224 TYTPLSEISNGLNSNGVENSSITKSSPRSSSSSNNERFKDTSEESIIFTSPNTPEHPSVY 283

Query: 271 QGISDPQI 294
           Q    P+I
Sbjct: 284 QTDITPEI 291


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
 Frame = +1

Query: 259 RNVFQGISDPQINSLRRLRRMDGVPDFRYHTKQTR--SNAVRQNFP 390
           RN    I+DP++   RR   +D   DFR +        N    NFP
Sbjct: 457 RNFNVSINDPEVQLSRRATSLDMSNDFRMNENDPSIVGNLAASNFP 502


>SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +1

Query: 190 SNNRFVSTSDINRITRNNDVPNIRNVFQGISDPQINSLRRLRRMDGVPD 336
           SN+R V T+D N +    D+ N++     +S  Q+ ++R ++  +   D
Sbjct: 200 SNHRMVYTADNNNLVYCYDIANLKTPLSVLSGHQL-AVRSIKSSNSAHD 247


>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +1

Query: 256 IRNVFQGISDPQINSLRRLRRMDGVPDFRYHTKQTRSNAVRQNFPETNVRTPE 414
           +RN  Q +    I +LRR+    G+  +  H  + R   +     ET++R PE
Sbjct: 101 LRNFVQALELTSIQTLRRVILTTGLKFYGLHLGEVRLPMI-----ETDIRVPE 148


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 19/68 (27%), Positives = 29/68 (42%)
 Frame = +3

Query: 222 KQNHS*QRCPQHTQCISGHFGPSNKLIAPVAAHGRRARLSLPHQTDAIQCSQTKLPRDQR 401
           K NH    CP    C++    P    +APV +   RA +SLP Q +  +     +P   R
Sbjct: 404 KINHVLDTCPL---CLNYETQP----LAPVISLSHRAYVSLPTQPELAKYHCLIVPTGHR 456

Query: 402 AHARRCSK 425
            +   C +
Sbjct: 457 INTLSCDE 464


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,278,913
Number of Sequences: 5004
Number of extensions: 48426
Number of successful extensions: 195
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)