Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27n14
(541 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_03_0031 + 7214010-7215450,7215534-7216913,7217007-7217386 30 1.0
08_02_1330 + 26191062-26191314,26191894-26191961,26192125-261923... 30 1.4
06_03_0077 + 16284106-16284128,16284552-16284795,16285490-162855... 30 1.4
02_02_0145 + 7163922-7165604 30 1.4
05_03_0125 + 8738770-8739237,8739266-8739742 29 1.8
11_01_0209 - 1642473-1642579,1642783-1642826,1642935-1643023,164... 28 4.1
01_06_0958 - 33357689-33357997,33358135-33358284,33358371-333585... 28 4.1
12_01_0210 - 1593732-1593823,1594730-1594773,1594895-1594983,159... 28 5.5
11_01_0417 - 3214320-3214435,3214606-3214702,3214766-3214768,321... 27 7.2
07_03_1027 - 23371826-23372006,23372110-23372171,23372595-233743... 27 7.2
04_04_0500 - 25677767-25680850 27 7.2
>10_03_0031 + 7214010-7215450,7215534-7216913,7217007-7217386
Length = 1066
Score = 30.3 bits (65), Expect = 1.0
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Frame = +1
Query: 31 NLRRVNKLYPNQASFLADNTRLLTSTPAGF--TNVLNAPSVRNLGNNRYQPGYQLSNNRF 204
NL ++ N A + NT +L + F N + + ++GN +LSNN+
Sbjct: 488 NLHMLDLSGNNLAGSIPSNTAMLKNVVMLFLQNNEFSGSIIEDIGNLTKLEHLRLSNNQL 547
Query: 205 VST--SDINRITRNNDVPNIRNVFQGISDPQINSLRRLRRMD 324
ST + + ++ RN+F G I L+++ +MD
Sbjct: 548 SSTVPPSLFHLDSLIELDLSRNLFSGALPVDIGHLKQIYKMD 589
>08_02_1330 +
26191062-26191314,26191894-26191961,26192125-26192355,
26192736-26192837,26192893-26192955,26193910-26193984
Length = 263
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +1
Query: 229 ITRNNDVPNIRNVFQGISDPQINSLRRLRRMDGVPDFRYHTKQT-RSNAVRQNFPETNVR 405
+ R + VP++R G+ PQ+NS ++ + VP+ K + V++ P N
Sbjct: 108 VMRKSSVPDLREKLSGVQRPQLNSTVQIPK--SVPEISTSAKPVQKREPVQKREPPVNAA 165
Query: 406 TP 411
P
Sbjct: 166 LP 167
>06_03_0077 +
16284106-16284128,16284552-16284795,16285490-16285591,
16286347-16287057
Length = 359
Score = 29.9 bits (64), Expect = 1.4
Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = +3
Query: 342 LPHQTDAIQCSQTKLPR---DQRAHARRCSKRTAAKPPFT*SHENLESSRSGHTLGRRRL 512
LP A S+TK PR D A A R + TA + PF +H +E +G GRRR
Sbjct: 36 LPVLPLAPSASRTKSPRLVLDHLAKAYRVLETTAQEAPFELNHLYVEMGSAGDK-GRRRR 94
Query: 513 S 515
S
Sbjct: 95 S 95
>02_02_0145 + 7163922-7165604
Length = 560
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = +1
Query: 70 SFLADNTRLLTSTPAGFTNVLNAPSVRNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDV 249
SF A+N + P + + N ++ NL N+ ++ N F ST N+I ++V
Sbjct: 475 SFTAENNQFSGELPTDMSRLANL-TMLNLAGNQLLTTVKIYINNFASTLPSNKIVSKSNV 533
Query: 250 PNIRNVFQG 276
I QG
Sbjct: 534 KEIGLQSQG 542
>05_03_0125 + 8738770-8739237,8739266-8739742
Length = 314
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +3
Query: 285 PSNKLIAP--VAAHGRRARLSLPHQTDAIQCSQTKLPRDQRAHARRCSKR 428
P K++AP VA+HGRR + L + + I ++ KL R+ A KR
Sbjct: 243 PLLKMVAPAVVASHGRRESIELHNDEEKIAAAKRKL-REGYQDAEEAKKR 291
>11_01_0209 -
1642473-1642579,1642783-1642826,1642935-1643023,
1643114-1643158,1643484-1643591,1643691-1643776,
1643917-1644004,1644211-1644387,1644720-1644795,
1644898-1644947,1645030-1645092,1645332-1645434,
1645513-1645615,1645731-1645791,1646268-1646308,
1646792-1646825
Length = 424
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -2
Query: 426 VLNTFGRAHVGLWEVLSDCIGSRLFGVVTKVWHAV 322
V + GR V ++ +LS I + LFG+ TK W A+
Sbjct: 63 VADRIGRKPVIMFSILSVVIFNTLFGLSTKYWMAL 97
>01_06_0958 -
33357689-33357997,33358135-33358284,33358371-33358511,
33359807-33360592
Length = 461
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 300 IAPVAAHGRRARLSLPHQTDA 362
+A AHGR L LPH TDA
Sbjct: 202 VAAATAHGREEPLLLPHGTDA 222
>12_01_0210 -
1593732-1593823,1594730-1594773,1594895-1594983,
1595076-1595120,1595457-1595564,1595647-1595732,
1595872-1595959,1596159-1596335,1596531-1596606,
1596709-1596758,1596834-1596896,1597152-1597254,
1597337-1597439,1597559-1597619,1598119-1598159,
1599790-1599961
Length = 465
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -2
Query: 426 VLNTFGRAHVGLWEVLSDCIGSRLFGVVTKVWHAV 322
V + GR V ++ +LS I + LFG+ TK W A+
Sbjct: 109 VADRIGRKPVIVFSILSVVIFNTLFGLSTKYWMAL 143
>11_01_0417 -
3214320-3214435,3214606-3214702,3214766-3214768,
3215054-3215196,3215309-3215348,3215713-3215765,
3215889-3215962,3216081-3216163,3216287-3216355,
3216456-3216800
Length = 340
Score = 27.5 bits (58), Expect = 7.2
Identities = 19/80 (23%), Positives = 29/80 (36%)
Frame = +1
Query: 31 NLRRVNKLYPNQASFLADNTRLLTSTPAGFTNVLNAPSVRNLGNNRYQPGYQLSNNRFVS 210
N R++N + + S A R++ ++ S R YQ R +
Sbjct: 251 NARQINNTHHSTTSSSAPAWRMVKEQKDSHLDLERLDSARKRLQENYQEAQNAKKQRTIQ 310
Query: 211 TSDINRITRNNDVPNIRNVF 270
DIN I + P RN F
Sbjct: 311 VMDINEIPK----PKNRNAF 326
>07_03_1027 -
23371826-23372006,23372110-23372171,23372595-23374335,
23374609-23374704,23374967-23375043,23376807-23377307
Length = 885
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 184 QLSNNRFVSTSDINRITRNNDVPNIRNVFQGISDPQINS 300
+ ++N F+S+S I+ + +V R VF GI P I S
Sbjct: 536 RFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVS 574
>04_04_0500 - 25677767-25680850
Length = 1027
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 190 SNNRFVSTSDINRITRNNDVPNIRNVFQGISDP 288
S++ F + ++ + DVPN R VF GI+ P
Sbjct: 190 SSSVFCEAALVDMYAKCGDVPNARRVFDGIACP 222
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,433,728
Number of Sequences: 37544
Number of extensions: 344310
Number of successful extensions: 925
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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