Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27n13
(523 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc... 217 8e-58
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 29 0.42
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 27 1.3
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 26 3.0
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 5.2
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 25 6.8
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 25 6.8
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 9.0
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 25 9.0
SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr ... 25 9.0
>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 192
Score = 217 bits (530), Expect = 8e-58
Identities = 100/148 (67%), Positives = 122/148 (82%)
Frame = +2
Query: 80 MPLQMTKPAPQFKATAVVNGEFKDISLSHYKGKYVVLFFYPLDFTFVCPTEIIAFSEKAD 259
M LQ+ KPAP FK TAVVNG F++I L+ YKGK+V L FYPLDFTFVCPTEI+AFSE A
Sbjct: 1 MSLQIGKPAPDFKGTAVVNGAFEEIKLADYKGKWVFLGFYPLDFTFVCPTEIVAFSEAAS 60
Query: 260 EFRKIGCEVLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETG 439
+F + +V+ STDS ++HLA+INTPRK+GGLG +NIPL++D SH++SRDYGVL E+ G
Sbjct: 61 KFAERNAQVILTSTDSEYSHLAFINTPRKEGGLGGINIPLLADPSHKVSRDYGVLIEDAG 120
Query: 440 IPFRGLFIIDDKQNLRQITINDLPVGRS 523
+ FRGLF+ID K LRQITINDLPVGRS
Sbjct: 121 VAFRGLFLIDPKGVLRQITINDLPVGRS 148
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 29.1 bits (62), Expect = 0.42
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Frame = +2
Query: 5 FISKASHSPVLSVFVYYSK---VFSFNKMPLQMT--KPAPQFKATAVVNGEFKDISLSHY 169
FI+ S + + SVFV +F+ + L P P F+ + +G+F S +
Sbjct: 234 FIASYSLAEITSVFVLADGTACIFTLSSSTLLKLHQSPEPHFELISKYSGDFPWKSCTIL 293
Query: 170 KGKYVVLFFYPLDFTFVCPTE 232
K K V L YP TF TE
Sbjct: 294 KSKPVSLCVYPEKITFNWLTE 314
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 27.5 bits (58), Expect = 1.3
Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 8/96 (8%)
Frame = +2
Query: 8 ISKASHSPVLSVFVYYSKVFSFNKMPLQMTKPAPQFKATAVVNGE--------FKDISLS 163
+S S S F+Y SF++ T +P+ TA+ FK +
Sbjct: 26 LSPIGDSKNTSSFIYLGNPISFHEYNYDETMVSPENVKTAIAGSAKDHETCRGFKKTGTT 85
Query: 164 HYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRK 271
YK F + D+T PT + S+ DEF K
Sbjct: 86 SYKD-----FVFSRDYTNWTPTFWVLLSQLIDEFLK 116
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 26.2 bits (55), Expect = 3.0
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +1
Query: 343 QAGRTRSHEHSSDKRQVAPHLSRLRSAGRGDGHPLPRTLHHRRQAEPQADHHQRP 507
+A R+ H H + + H R S G H +LH QA+P A ++P
Sbjct: 448 KAVRSARHRHYASLDEQGLHSLRNLSKTSGMNHSADFSLHEFGQADPFAYEIEKP 502
>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 198
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = -1
Query: 508 QVVDGDL-PEVLLVVDDEESSEGDARLLVQ 422
++ D DL PEV ++ +EES G++R L++
Sbjct: 129 EIADNDLEPEVYDILYEEESKLGESRDLIR 158
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 56 SKVFSFNKMPLQMTKPAPQFKATAVVN 136
S +FSFN TKP+P +T N
Sbjct: 467 SSIFSFNAPSAASTKPSPAVSSTFSFN 493
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1647
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2
Query: 350 GGLGPMNIPLISDKS 394
GGL PM+IP IS +S
Sbjct: 673 GGLAPMSIPAISKRS 687
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 371 IPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQN 481
IPL +D S + DEE R FI++D+++
Sbjct: 43 IPLDNDNDENDSSEESATDEEAERQVREGFIVEDEED 79
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 212 TFVCPTEIIAFSEKADEFRKIGCEVLGASTDSHFT 316
TF T + E DEF ++G +VLG D+ T
Sbjct: 556 TFGGQTALNVGIELKDEFEQLGVKVLGTPIDTIIT 590
>SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 238
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 124 RGLELGSGFGHLQRHLVETKD 62
R L+LG+G GHL L+E +D
Sbjct: 67 RVLDLGTGNGHLLFRLLEEED 87
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,772,302
Number of Sequences: 5004
Number of extensions: 32391
Number of successful extensions: 107
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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