Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27n13
         (523 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U37429-15|AAN63412.1|  195|Caenorhabditis elegans Peroxiredoxin ...   237   3e-63
Z32683-2|CAA83619.1|  226|Caenorhabditis elegans Hypothetical pr...   202   2e-52
AC024761-15|AAM97968.1|  231|Caenorhabditis elegans Hypothetical...    56   2e-08
Z82095-7|CAN86628.1|  390|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z82095-6|CAI79281.2|  412|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z82095-5|CAB05026.2|  414|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z46935-4|CAA87051.1|  270|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z18854-1|CAA79306.1|  270|Caenorhabditis elegans capping protein...    29   2.7  
Z18806-1|CAA79270.1|  270|Caenorhabditis elegans capping protein...    29   2.7  
Z34533-1|CAA84302.3|  730|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AC006714-6|AAN84810.2|  339|Caenorhabditis elegans Hypothetical ...    28   4.7  
AF025453-4|ABC48262.1|  905|Caenorhabditis elegans Hypothetical ...    27   6.2  

>U37429-15|AAN63412.1|  195|Caenorhabditis elegans Peroxiredoxin
           protein 2 protein.
          Length = 195

 Score =  237 bits (580), Expect = 3e-63
 Identities = 110/142 (77%), Positives = 123/142 (86%)
 Frame = +2

Query: 98  KPAPQFKATAVVNGEFKDISLSHYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIG 277
           KPAPQFK  AVV+GEF D+SLS YKGKYVVLFFYPLDFTFVCPTEIIAFS++A+EF+ I 
Sbjct: 8   KPAPQFKTQAVVDGEFVDVSLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKAIN 67

Query: 278 CEVLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGL 457
             VL ASTDS F+HLAWIN PRK GGLG MNIP+++D +H+ISRDYGVL E+ GI FRGL
Sbjct: 68  TVVLAASTDSVFSHLAWINQPRKHGGLGEMNIPVLADTNHQISRDYGVLKEDEGIAFRGL 127

Query: 458 FIIDDKQNLRQITINDLPVGRS 523
           FIID  QNLRQITINDLPVGRS
Sbjct: 128 FIIDPSQNLRQITINDLPVGRS 149


>Z32683-2|CAA83619.1|  226|Caenorhabditis elegans Hypothetical
           protein R07E5.2 protein.
          Length = 226

 Score =  202 bits (492), Expect = 2e-52
 Identities = 89/147 (60%), Positives = 115/147 (78%)
 Frame = +2

Query: 83  PLQMTKPAPQFKATAVVNGEFKDISLSHYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADE 262
           PL      P FK TAVV+G+FK IS   YKGK++V+FFYPLDFTFVCPTEIIA+ ++A+E
Sbjct: 32  PLGPKNTVPAFKGTAVVDGDFKVISDQDYKGKWLVMFFYPLDFTFVCPTEIIAYGDRANE 91

Query: 263 FRKIGCEVLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGI 442
           FR +G EV+  S DSHF+HLAW+NTPRK GGLG M+IPL++D + +I+  +GVLD+E+G+
Sbjct: 92  FRSLGAEVVACSCDSHFSHLAWVNTPRKDGGLGDMDIPLLADFNKKIADSFGVLDKESGL 151

Query: 443 PFRGLFIIDDKQNLRQITINDLPVGRS 523
            +RGLF+ID    +R  T NDLPVGRS
Sbjct: 152 SYRGLFLIDPSGTVRHTTCNDLPVGRS 178


>AC024761-15|AAM97968.1|  231|Caenorhabditis elegans Hypothetical
           protein Y38C1AA.11 protein.
          Length = 231

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
 Frame = +2

Query: 146 KDISLSHYKGK-YVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVLGASTDSHFTHL 322
           K+ +L +Y G+ +++LF +P DFT VC TE+    + A EFRK   ++L  S DS  TH 
Sbjct: 18  KNQTLHNYIGEQWLMLFSHPADFTPVCTTELAELVKLAPEFRKRHVQILAISIDSSETHR 77

Query: 323 AW---INTPRKQGGLGP-MNIPLISDKSHRISRDYGVLDEE 433
            W   IN+  +    G  +   +I+D    I  + G++D +
Sbjct: 78  DWAKDINSVAQLSNCGSHLPFEIIADTDRSICTELGMIDPD 118


>Z82095-7|CAN86628.1|  390|Caenorhabditis elegans Hypothetical
           protein ZK849.2c protein.
          Length = 390

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 511 GQVVDGDLPEVLLVVDDEESSEGDARLLVQHS 416
           GQV  GDL   L+ V  +E S+ D  + ++HS
Sbjct: 331 GQVQQGDLDLELVFVCPDEDSDDDGTVTIEHS 362


>Z82095-6|CAI79281.2|  412|Caenorhabditis elegans Hypothetical
           protein ZK849.2b protein.
          Length = 412

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 511 GQVVDGDLPEVLLVVDDEESSEGDARLLVQHS 416
           GQV  GDL   L+ V  +E S+ D  + ++HS
Sbjct: 353 GQVQQGDLDLELVFVCPDEDSDDDGTVTIEHS 384


>Z82095-5|CAB05026.2|  414|Caenorhabditis elegans Hypothetical
           protein ZK849.2a protein.
          Length = 414

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 511 GQVVDGDLPEVLLVVDDEESSEGDARLLVQHS 416
           GQV  GDL   L+ V  +E S+ D  + ++HS
Sbjct: 355 GQVQQGDLDLELVFVCPDEDSDDDGTVTIEHS 386


>Z46935-4|CAA87051.1|  270|Caenorhabditis elegans Hypothetical
           protein M106.5 protein.
          Length = 270

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 31/142 (21%), Positives = 63/142 (44%), Gaps = 12/142 (8%)
 Frame = +2

Query: 134 NGEFKDISLSHYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKI-GC-------EVL 289
           N  F+     +++G    ++F+ LD        I+   ++ D  + I GC       E+ 
Sbjct: 101 NAAFESYRDLYFEGGVSSVYFWDLDNGGFAG--IVLIKKEGDGAKNITGCWDSIHVIEIT 158

Query: 290 GASTDSHF----THLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGL 457
             +  +H+    T + W+ T +   G+  MN+     + H +  D  + D+ T +   G 
Sbjct: 159 ERARQAHYKLTSTIMLWLQTNKSSSGV--MNLGGSLTRQHEM--DAPINDQNTHLANMGR 214

Query: 458 FIIDDKQNLRQITINDLPVGRS 523
            I D +  +R +TIN++  G++
Sbjct: 215 MIEDQESKMR-LTINEIYFGKT 235


>Z18854-1|CAA79306.1|  270|Caenorhabditis elegans capping protein
           beta subunit protein.
          Length = 270

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 31/142 (21%), Positives = 63/142 (44%), Gaps = 12/142 (8%)
 Frame = +2

Query: 134 NGEFKDISLSHYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKI-GC-------EVL 289
           N  F+     +++G    ++F+ LD        I+   ++ D  + I GC       E+ 
Sbjct: 101 NAAFESYRDLYFEGGVSSVYFWDLDNGGFAG--IVLIKKEGDGAKNITGCWDSIHVIEIT 158

Query: 290 GASTDSHF----THLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGL 457
             +  +H+    T + W+ T +   G+  MN+     + H +  D  + D+ T +   G 
Sbjct: 159 ERARQAHYKLTSTIMLWLQTNKSSSGV--MNLGGSLTRQHEM--DAPINDQNTHLANMGR 214

Query: 458 FIIDDKQNLRQITINDLPVGRS 523
            I D +  +R +TIN++  G++
Sbjct: 215 MIEDQESKMR-LTINEIYFGKT 235


>Z18806-1|CAA79270.1|  270|Caenorhabditis elegans capping protein
           beta subunit protein.
          Length = 270

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 31/142 (21%), Positives = 63/142 (44%), Gaps = 12/142 (8%)
 Frame = +2

Query: 134 NGEFKDISLSHYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKI-GC-------EVL 289
           N  F+     +++G    ++F+ LD        I+   ++ D  + I GC       E+ 
Sbjct: 101 NAAFESYRDLYFEGGVSSVYFWDLDNGGFAG--IVLIKKEGDGAKNITGCWDSIHVIEIT 158

Query: 290 GASTDSHF----THLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGL 457
             +  +H+    T + W+ T +   G+  MN+     + H +  D  + D+ T +   G 
Sbjct: 159 ERARQAHYKLTSTIMLWLQTNKSSSGV--MNLGGSLTRQHEM--DAPINDQNTHLANMGR 214

Query: 458 FIIDDKQNLRQITINDLPVGRS 523
            I D +  +R +TIN++  G++
Sbjct: 215 MIEDQESKMR-LTINEIYFGKT 235


>Z34533-1|CAA84302.3|  730|Caenorhabditis elegans Hypothetical
           protein B0285.1 protein.
          Length = 730

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 364 HEHSSDKRQVAPHLSRLRSAGRGDGHPLPRTLHHRRQAEP 483
           HE  S K++ +  L R      G GH +  T H R   +P
Sbjct: 625 HEMWSKKQKKSARLGRQAEGSSGSGHSIRATSHPRAPTQP 664


>AC006714-6|AAN84810.2|  339|Caenorhabditis elegans Hypothetical
           protein Y119D3B.12a protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
 Frame = +1

Query: 373 SSDKRQVAPHLSRLRSAGRGDGHPLPRTLHHR--RQAEPQADHHQRPARGE 519
           S  K ++    SR RS  RG         HH   R +    DH  R  RGE
Sbjct: 252 SQQKAEMKRKRSRSRSTDRGADRKRSTEQHHHSHRSSRDHRDHRHRDHRGE 302


>AF025453-4|ABC48262.1|  905|Caenorhabditis elegans Hypothetical
           protein C08F1.5b protein.
          Length = 905

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +1

Query: 1   DFYFKSESFSGAFGFRLLFKSL 66
           DFYF  E F+ AFGF   F SL
Sbjct: 176 DFYFVKEGFNSAFGFS-FFPSL 196


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,216,801
Number of Sequences: 27780
Number of extensions: 197383
Number of successful extensions: 774
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)