Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27n09
(510 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 55 5e-09
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 37 0.002
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 33 0.019
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 31 0.076
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy... 29 0.31
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy... 28 0.93
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch... 27 1.6
SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces... 27 1.6
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 27 2.2
SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit L3|S... 27 2.2
SPBC1861.08c |||U2 snRNP-associated protein Lea1 |Schizosaccharo... 26 2.9
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 25 6.6
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 6.6
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 25 8.7
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 25 8.7
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 25 8.7
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 25 8.7
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 55.2 bits (127), Expect = 5e-09
Identities = 37/114 (32%), Positives = 50/114 (43%)
Frame = +3
Query: 150 ITRLSLSHNKISVVPXXXXXXXXXXXXXXXXXXXXXXPVSLSSLPKLRILNVSLNKLYNL 329
I RL+L HN I + P SL L L IL++S NK+ L
Sbjct: 54 IARLALGHNFIKSIGPEILKFTRLRYLNIRSNVLREFPESLCRLESLEILDISRNKIKQL 113
Query: 330 PRGFGSFPVLEILDLTYNNLNEKVLPGNFFIMDSLRALYLGDNDFEFLPPEIGN 491
P FG+ L++L ++ N L E LP M +L L + +N F PP I N
Sbjct: 114 PESFGALMNLKVLSISKNRLFE--LPTYIAHMPNLEILKIENNHIVFPPPHIAN 165
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 36.7 bits (81), Expect = 0.002
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +3
Query: 261 PVSLSSLPKLRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFFIMDSLRA 440
P S L L L++S N P LE L+ ++N L++ + + L+
Sbjct: 518 PHSTRYLVNLTYLDLSYNNFVTFPLIITELSQLETLNFSHNLLSQ--ISSKIGSLVKLKH 575
Query: 441 LYLGDNDFEF-LPPEIGNLKNLQ 506
LYL ND LP EIG LKNL+
Sbjct: 576 LYLQFNDLSNRLPQEIGLLKNLE 598
Score = 35.1 bits (77), Expect = 0.006
Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Frame = +3
Query: 141 LENITRLSLSHNKISVVPXXXXXXXXXXXXXXXXXXXXXXPVSLSSLPKLRILNVSLNKL 320
L N+T L LS+N P + SL KL+ L + N L
Sbjct: 524 LVNLTYLDLSYNNFVTFPLIITELSQLETLNFSHNLLSQISSKIGSLVKLKHLYLQFNDL 583
Query: 321 YN-LPRGFGSFPVLEILDLTYN 383
N LP+ G LE +DL+YN
Sbjct: 584 SNRLPQEIGLLKNLETIDLSYN 605
Score = 33.5 bits (73), Expect = 0.019
Identities = 31/145 (21%), Positives = 54/145 (37%), Gaps = 1/145 (0%)
Frame = +3
Query: 72 NNPEIDLVDKGISSLEEIPGLFSLENITRLSLSHNK-ISVVPXXXXXXXXXXXXXXXXXX 248
+NP +D L I FS N+ +SH K I +
Sbjct: 635 SNPSATFIDFSFCPLTTIDPAFSYSNLVYFDISHAKLIGLKDSVIETLVNVETVKVNYNH 694
Query: 249 XXXXPVSLSSLPKLRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFFIMD 428
++S++ L+ L+ + ++ + G L LDL NN+ K+ P + +
Sbjct: 695 FTSISDAISAMQNLKYLSCTNCEMSYVSPNLGKLKHLVHLDLHANNI--KIFPEEVWQVS 752
Query: 429 SLRALYLGDNDFEFLPPEIGNLKNL 503
SL+ + L N E + + K L
Sbjct: 753 SLKVVNLSSNILEKIKLPVATSKKL 777
Score = 33.1 bits (72), Expect = 0.025
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = +3
Query: 261 PVSLSSLPK--LRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFFIMDSL 434
P+ S L + L+ LN++ NKL+ LP L LDL+YNN P + L
Sbjct: 493 PLIFSGLSRNSLKELNIANNKLFFLPHSTRYLVNLTYLDLSYNNF--VTFPLIITELSQL 550
Query: 435 RALYLGDNDFEFLPPEIGNLKNLQ 506
L N + +IG+L L+
Sbjct: 551 ETLNFSHNLLSQISSKIGSLVKLK 574
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 33.5 bits (73), Expect = 0.019
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = +3
Query: 411 NFFIMDSLRALYLGDNDFEFLPPEIGNLKNLQI 509
+ F L LY+ N+ LPPEIG LKNL I
Sbjct: 176 DLFKFSFLTELYINHNNLTRLPPEIGKLKNLVI 208
Score = 27.5 bits (58), Expect = 1.2
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = +3
Query: 318 LYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFFIMDSLRALYLGDNDFEFLPPEIGNLK 497
L N+ F L L + +NNL LP + +L L N + +PPE+G L
Sbjct: 170 LRNVSTDLFKFSFLTELYINHNNLTR--LPPEIGKLKNLVILDASGNSIKTIPPELGLLT 227
Query: 498 NLQ 506
L+
Sbjct: 228 ELR 230
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 31.5 bits (68), Expect = 0.076
Identities = 28/78 (35%), Positives = 38/78 (48%)
Frame = +3
Query: 270 LSSLPKLRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFFIMDSLRALYL 449
+SSL L +L + NKL NL S P++ + L +N L + F LR LY+
Sbjct: 753 ISSLQNLMVLQLDNNKLTNLK---ASQPMIHLRILRISNNAIHQLEVDQF--PHLRTLYM 807
Query: 450 GDNDFEFLPPEIGNLKNL 503
N F PP+I LK L
Sbjct: 808 DLNRFN-RPPDIRRLKRL 824
Score = 29.5 bits (63), Expect = 0.31
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 2/123 (1%)
Frame = +3
Query: 102 GISSLEEIPGLFSLENITRLSLSHNKISVVPXXXXXXXXXXXXXXXXXXXXXXPVSLSSL 281
G + +EEI + SL+N+ L L +NK++ + +
Sbjct: 743 GNNEIEEIEEISSLQNLMVLQLDNNKLT---NLKASQPMIHLRILRISNNAIHQLEVDQF 799
Query: 282 PKLRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFFIMDSL--RALYLGD 455
P LR L + LN+ +N P + +++ ++ + + NF I SL R LYL +
Sbjct: 800 PHLRTLYMDLNR-FNRPPDIRR--LKRLVNFSFRTQDPEA--SNFVIQPSLDIRNLYLSN 854
Query: 456 NDF 464
N F
Sbjct: 855 NTF 857
>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 454
Score = 29.5 bits (63), Expect = 0.31
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 181 ILLWLRDRRVMFSRENKPGISSRLDIPLSTKSI 83
IL W+ + MFSR+ P ++S L +P K I
Sbjct: 89 ILSWISPLKKMFSRKKSPTLTSSLPVPGMPKGI 121
>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 385
Score = 27.9 bits (59), Expect = 0.93
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -3
Query: 136 NKPGISSRLDIPLSTKSISGLFISLASSITFLAFDILPVF 17
NKP D+ S +G+F SL T+ A D LP +
Sbjct: 201 NKPAYFGSKDLKQSAPLFTGIFSSLDDIPTYSASDYLPAY 240
>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 244
Score = 27.1 bits (57), Expect = 1.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 441 KHGDCP**RSSQVILFHSNYCMLDPIS 361
+HG P SS ++ ++ NYC P+S
Sbjct: 210 EHGSSPLESSSGLVYYNRNYCSTSPLS 236
>SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 298
Score = 27.1 bits (57), Expect = 1.6
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -3
Query: 364 ISSTGKEPKPLGKLYSLFNETLRILNLGSDDK 269
I STG++PK LGK Y E + I N+ D K
Sbjct: 208 IFSTGRQPKILGKPYDEMMEAI-IANVNFDRK 238
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 26.6 bits (56), Expect = 2.2
Identities = 23/89 (25%), Positives = 39/89 (43%)
Frame = +2
Query: 29 DVES*KSY*RSQRNK*SGNRFSRQRNI*SRRDSRLIFSGEHHSSVPKPQQNLCSACCTSQ 208
D ES +S +S RN+ + FSR++N R + ++ S +Q L + S
Sbjct: 181 DPESDQSI-KSSRNRRRESSFSREKNPDLTRSDSIHYTANTRLSEKFEEQGLAYSTIFSH 239
Query: 209 LEQLRNSKLGQ*QHSRASSQLIITTQVKD 295
+E + + L+ITT VK+
Sbjct: 240 IESFPITGSTSFDSILGNGVLVITTLVKE 268
>SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit
L3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 326
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 306 SLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPG 410
S KL+++ + FG F VLE + Y L E+ + G
Sbjct: 81 SNEKLWSIGKVFGDFYVLEYIKCKYPRLPEEAVHG 115
>SPBC1861.08c |||U2 snRNP-associated protein Lea1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 239
Score = 26.2 bits (55), Expect = 2.9
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = +3
Query: 354 VLEILDLTYNNLNEKVLPGNFFIMDSLRALYLGDNDFEFLPPEIG----NLKNLQI 509
V + +D T N++ GNF M L+ L G+N + P+IG NLK L +
Sbjct: 42 VHDAIDFTDNDIRYL---GNFPRMKRLQTLLCGNNRITAIAPDIGKVLPNLKTLSL 94
>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 25.0 bits (52), Expect = 6.6
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -3
Query: 388 KLLYVRSNISSTGKEPKPLGKLYSLFNETLRILNLGSDDKLTGSS 254
++L + N S+ E KLYSLF +++ ++ D+K SS
Sbjct: 318 QILEMIENFSAINSELLESTKLYSLFTLLVKLSDIPLDEKYDFSS 362
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 6.6
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = -3
Query: 445 YKARRLSIIKKFP-GNTFS---FKLLYVRSNISSTGKEPKPLGKLYSLFNETLRILN 287
YK +R SI++KFP N S LL + + T K+ + L ++ N +L +L+
Sbjct: 178 YKEKRPSIVEKFPLHNLLSRWIHSLLIKSISYAQTEKQEAKVTPLLAIINMSLVLLS 234
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 24.6 bits (51), Expect = 8.7
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -3
Query: 484 ISGGRNSKSLSPKYKARRLSIIKKFPGNTFSFKL 383
I GGRNS SL+P A + + FP + SF L
Sbjct: 691 IGGGRNSNSLTP--NANLGADVSFFPTDDTSFLL 722
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 24.6 bits (51), Expect = 8.7
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -3
Query: 451 PKYKARRLSIIKKFPGNTFSFKLLYVRSNISSTGKE 344
PKY ++++++ PG FS L +R + S+ KE
Sbjct: 426 PKYAGHVVAVLQRAPGQVFSGTLGILRPS-SAANKE 460
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 24.6 bits (51), Expect = 8.7
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = -3
Query: 163 DRRVMFSRENKPGISSRLDIPLSTKSISGLFISLASSITF 44
D + +RE P + ++PL+ + I +FI L + + F
Sbjct: 183 DSANLTNREPYPAWTPENELPLTKEEIEDIFIDLTNKLGF 222
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 24.6 bits (51), Expect = 8.7
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 261 PVSLSSLPKLRILNVSLNKLYNLPRGFG-SFPVLEILDLTYNNL 389
P +L LP+L LN++ NK+ + S L+IL L+ N+L
Sbjct: 372 PYALGELPQLCSLNLASNKITGCRTFYHISLSHLQILVLSRNHL 415
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,027,451
Number of Sequences: 5004
Number of extensions: 39611
Number of successful extensions: 132
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -