Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27n03
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo...    28   1.1  
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    27   1.9  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    27   1.9  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    27   2.5  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.5  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    27   2.5  
SPBC947.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   3.4  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    26   3.4  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   4.4  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   5.9  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   7.7  
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    25   7.7  

>SPBC947.07 |||ribosome biogenesis protein
           Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 233

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = -1

Query: 492 SDTCSDDKGSASSVSIAGTNKHASFGSLVTYLDSLITDNTFLYEALTVPSL--GYTKIFG 319
           S   + D G++S  +IA   ++ +  S +TY   ++ D+ F    L V     G T +FG
Sbjct: 64  SKVAAYDTGNSSD-NIAD-EENDNHKSTITYGTLIVGDDKFSNGKLKVAGKKRGPTDVFG 121

Query: 318 SLPHLEKSK 292
           +L HLE  K
Sbjct: 122 ALKHLEAKK 130


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
 Frame = +2

Query: 191 ELPSFATLDDLHLKPSRQKRNPASATQPCR---MDTCFDFSKCGSDPKIFVYPSDGTVSA 361
           ++PS  TLD+  +KP   +R       P +   MD  FD      DP+I          +
Sbjct: 141 QMPSSMTLDNSEIKPVLNQRKNYLKPDPYQLPEMDVSFDKLGSSYDPRIMSQDELTQYVS 200

Query: 362 SYRKV 376
           S+ K+
Sbjct: 201 SFTKI 205


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
 Frame = +2

Query: 143 YGNTSFKSDTCK-----SKLNELPSFATLDDLHLKPSRQKRN 253
           Y N  + SD        S L++LP     DDL L P +++RN
Sbjct: 158 YNNYDYTSDPSSPNYISSSLDQLPHLDDEDDLQLTPIKEERN 199


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +2

Query: 350 TVSASYRKVLSVIRESRYVTRDP-NEACLFVPAIDTLDADPLSSEHVSD 493
           TV+ +  K +S +R S+   ++  N  C  + A DT+ A+P+  +HV +
Sbjct: 106 TVTGNQDKPISRLRASKLQIQNFWNYICFELLANDTVPANPIKEKHVEN 154


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 28/127 (22%), Positives = 50/127 (39%)
 Frame = +2

Query: 122 AFLLYCYYGNTSFKSDTCKSKLNELPSFATLDDLHLKPSRQKRNPASATQPCRMDTCFDF 301
           AFL++  YGN+SF     K  LN+L    + ++L  +   +    A+ T        +  
Sbjct: 22  AFLVHQIYGNSSF----TKISLNQLEGRDSQEELQRRQEIRYYGRAAETGGTPTYYGYAT 77

Query: 302 SKCGSDPKIFVYPSDGTVSASYRKVLSVIRESRYVTRDPNEACLFVPAIDTLDADPLSSE 481
               S+P IF   +  + + SY   +S   +    ++ P+    F P           S 
Sbjct: 78  PTSSSEPSIFSESATPSETNSYSSPVSSYSDPA-TSQLPSSTSFFSPTSSEYTPSSTESS 136

Query: 482 HVSDVAS 502
            + D +S
Sbjct: 137 SLLDPSS 143


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
 Frame = +2

Query: 338 PSDGTVSASYRKVLSVIRESRYVTRDPNEACLFVP----AIDTLDADPLSSEHVSDVASR 505
           P +  V  S  KV+S +  S  ++ D      F      A DT +  P   E + +    
Sbjct: 397 PRERNVETSLHKVVSSLDLSEEISPDRATPTSFTERKRFAFDTRNRPPEVRELIVECLGS 456

Query: 506 LSRLPYW 526
           LSR+PY+
Sbjct: 457 LSRIPYF 463


>SPBC947.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 100

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 243 KNAILLLQHSLVVWIHVSTFLNVEVIQKFLCTQVMGLSVL 362
           +N  +LL   L   +H+  F   + I KFLCT   G ++L
Sbjct: 46  ENGEILLTSWLNRSVHIEIFDERKFIGKFLCTDREGAAIL 85


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 104 LLFMSCAFLLYCYYGNTSFKSDTC 175
           LL+++CAFL Y   GN +F+S  C
Sbjct: 261 LLWLTCAFLSYMAQGN-AFRSLVC 283


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 80  MQAKRRYLLLFMSCAFLLYCYYGN-TSFKSDT 172
           +Q +  YL++ ++C +LL CY     +  SDT
Sbjct: 282 IQCQALYLIIRLTCLYLLSCYESEILNLSSDT 313


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 286 IHTTRLCCRSRIAFLSR-WFKVQIIKCCKRWQFI 188
           +  TR+  +S   +++R WF+V +   C RW  +
Sbjct: 354 LRQTRIIAKSSCDYITRYWFRV-LFNACMRWVLV 386


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +2

Query: 95   RYLLLFM-SCAFLLYCYYGNTSFKS 166
            R+ L+F+  CA L YC YG  SF++
Sbjct: 1718 RFSLIFLRKCALLWYCRYG-VSFET 1741


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = -3

Query: 145 VVAIQKKSTRHEK 107
           VVA+Q+ STRHEK
Sbjct: 904 VVALQRTSTRHEK 916


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,421,874
Number of Sequences: 5004
Number of extensions: 50277
Number of successful extensions: 167
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)