Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27n03
(567 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0141 - 25964706-25965473 33 0.12
08_01_0628 - 5460030-5462960 30 1.5
09_04_0090 + 14512641-14513355,14514158-14514219 29 2.0
03_03_0216 + 15495395-15495566,15495648-15495733,15495824-154958... 29 2.0
01_06_0529 - 30026101-30026277,30026363-30026438,30026509-300265... 29 2.0
04_04_0486 - 25582072-25582283,25582366-25582420,25582503-255825... 29 2.6
02_01_0650 - 4838977-4839078,4839179-4839196,4839371-4839528,483... 28 6.0
12_02_1066 + 25785749-25785868,25785953-25786141,25786250-257864... 27 7.9
03_05_0834 - 28051067-28051381,28051675-28052120,28052330-280526... 27 7.9
01_06_1627 + 38742294-38742746,38742831-38743120,38743544-38744027 27 7.9
>05_06_0141 - 25964706-25965473
Length = 255
Score = 33.5 bits (73), Expect = 0.12
Identities = 27/83 (32%), Positives = 38/83 (45%)
Frame = +2
Query: 218 DLHLKPSRQKRNPASATQPCRMDTCFDFSKCGSDPKIFVYPSDGTVSASYRKVLSVIRES 397
+L L PSR + P A CR CF F+ + + D +S S + L+ + ES
Sbjct: 129 ELWLHPSRYRTRPCRAGVACRRRVCF-FAHTAGELRA-GSKEDSPLSLSPKSTLASLWES 186
Query: 398 RYVTRDPNEACLFVPAIDTLDAD 466
V+ P E +V ID DAD
Sbjct: 187 PPVS--PVEGRRWVDGIDECDAD 207
>08_01_0628 - 5460030-5462960
Length = 976
Score = 29.9 bits (64), Expect = 1.5
Identities = 21/86 (24%), Positives = 38/86 (44%)
Frame = -1
Query: 516 NLDRREATSDTCSDDKGSASSVSIAGTNKHASFGSLVTYLDSLITDNTFLYEALTVPSLG 337
N+ R D C+ + SAS+ IA +FGS LD+ + L L + +
Sbjct: 571 NIRVRHLALDRCTSSRRSASAAKIAALRSFQAFGS---KLDASLMSCFRLLTVLNLWFIE 627
Query: 336 YTKIFGSLPHLEKSKHVSIRQGCVAE 259
K+ ++ +L +++ IR + E
Sbjct: 628 INKLPSTVTNLRNLRYLGIRSTFIEE 653
>09_04_0090 + 14512641-14513355,14514158-14514219
Length = 258
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +2
Query: 440 PAIDTLDADPLSSEHVSDVASRLSRLPYWRNGRNHLI 550
PAID L ADP SS H + +R+S R G +H++
Sbjct: 130 PAIDRLAADPSSSSHRAAGDTRMSSAE--RGGDHHMV 164
>03_03_0216 +
15495395-15495566,15495648-15495733,15495824-15495874,
15496005-15496390,15496760-15496898,15497540-15497595,
15497712-15497782,15497876-15498081
Length = 388
Score = 29.5 bits (63), Expect = 2.0
Identities = 22/74 (29%), Positives = 32/74 (43%)
Frame = +2
Query: 302 SKCGSDPKIFVYPSDGTVSASYRKVLSVIRESRYVTRDPNEACLFVPAIDTLDADPLSSE 481
S C S F+ + +YRK I +S+Y T D N C+ V + L A L
Sbjct: 34 SDCESGNAAFLEDFSSRIWITYRKGFDAISDSKY-TSDVNWGCM-VRSSQMLVAQALIFH 91
Query: 482 HVSDVASRLSRLPY 523
H+ + S+ PY
Sbjct: 92 HLGRSWRKPSQKPY 105
>01_06_0529 -
30026101-30026277,30026363-30026438,30026509-30026570,
30026882-30027031,30027213-30027338,30028096-30028305,
30028870-30028938,30029024-30029080,30029131-30029277,
30029358-30029542,30029623-30029698,30029796-30029918,
30030395-30030410,30031743-30032745,30033521-30033789,
30034297-30034415
Length = 954
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 204 LQHLMICTLNHLDKNAILLLQH 269
LQH++ C NH++K A LL QH
Sbjct: 292 LQHMLGCLKNHVEKYAALLDQH 313
>04_04_0486 -
25582072-25582283,25582366-25582420,25582503-25582559,
25582674-25582765,25583148-25583280,25583357-25583434,
25583531-25583676,25583702-25583749,25583804-25584011,
25584154-25584220,25584441-25584499
Length = 384
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = -1
Query: 420 FGSLVTYLDSLITDNTFLYEALTVPSLGY 334
FGS+ +L + ITD+ +Y +++ PSL Y
Sbjct: 34 FGSIRYHLQASITDSENIYLSISTPSLSY 62
>02_01_0650 -
4838977-4839078,4839179-4839196,4839371-4839528,
4839663-4839895,4840345-4840631,4841391-4841819
Length = 408
Score = 27.9 bits (59), Expect = 6.0
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 12/88 (13%)
Frame = +2
Query: 317 DPKIFVYPSDGTVSASYRK---VLSVIRESRYVTRDPNEACLFVPAID--TLDADPLSSE 481
DPK F Y + ++ Y IRESR+ T DP++A LF I + S E
Sbjct: 90 DPKTF-YQTPRKLTGKYASEGYFFQNIRESRFRTGDPDKAHLFFVPISPHKMRGKGTSYE 148
Query: 482 H----VSD-VASRLSRLPYWRN--GRNH 544
+ V D V +++ PYW G +H
Sbjct: 149 NMTIIVKDYVEGLINKYPYWNRTLGADH 176
>12_02_1066 +
25785749-25785868,25785953-25786141,25786250-25786414,
25786649-25786999,25787924-25788001,25788137-25788277,
25788415-25788459,25788597-25788763,25788833-25788911,
25788985-25789067,25789219-25789348,25789432-25789564,
25789955-25790103,25790339-25790534,25791086-25791288
Length = 742
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -1
Query: 342 LGYTKIFGSLPHLEKSKHV 286
+GY IFG LP LE K V
Sbjct: 678 IGYASIFGELPKLESKKDV 696
>03_05_0834 -
28051067-28051381,28051675-28052120,28052330-28052671,
28053170-28053310,28053419-28053489,28053575-28053640,
28053874-28054017,28054149-28054207,28054246-28054369,
28054730-28054862,28055138-28055187,28055715-28055824,
28057355-28057436,28057536-28057705,28057812-28058498,
28058645-28058794,28058908-28059039,28059444-28059594,
28060253-28060344,28062478-28062585
Length = 1190
Score = 27.5 bits (58), Expect = 7.9
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Frame = -1
Query: 435 NKHASF-GSLVTYLDSLITDNTFLYEALTVPSLGYTKIFGSLPHLEKS-KHVSIRQGCVA 262
+K SF G + + + + ++ ++L + G+ FG++ H E S H G V
Sbjct: 499 SKDRSFAGVIAPFSEKSVQGDSRAKKSLFNSNCGFN--FGAVSHWEGSLDHSCAASGNVL 556
Query: 261 EAGLRFCLDGLRCRSSSVAKDGNSFNFDLQV 169
+R C GL C + +A+D +D+++
Sbjct: 557 VNSIR-CHTGLACLLTGLARDSGDALYDMKL 586
>01_06_1627 + 38742294-38742746,38742831-38743120,38743544-38744027
Length = 408
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 320 DHFHI*KSRNMYPYDKAVLQKQDCVFV 240
D HI KS N+ YD A+ DCV V
Sbjct: 201 DGIHIHKSTNVAVYDAAIRTGDDCVSV 227
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,513,434
Number of Sequences: 37544
Number of extensions: 289545
Number of successful extensions: 859
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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