Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27n03
         (567 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73425-6|CAB61014.1|  382|Caenorhabditis elegans Hypothetical pr...    99   3e-21
U94834-1|AAC47509.1|  378|Caenorhabditis elegans multiple exosto...    99   3e-21
AB241458-1|BAF48989.1|  382|Caenorhabditis elegans heparan sulfa...    99   3e-21
AC024753-8|AAF60455.1|  174|Caenorhabditis elegans Hypothetical ...    29   2.3  
Z81576-1|CAB04643.2|  312|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z93383-2|CAB07624.1|  253|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AY494975-1|AAR87492.1|  486|Caenorhabditis elegans collagen/olfa...    28   5.4  
AF000262-4|AAN60526.2|  486|Caenorhabditis elegans Colmedin (col...    28   5.4  
Z81142-3|CAB03505.1|  491|Caenorhabditis elegans Hypothetical pr...    27   7.1  
Z75537-2|CAA99835.1|  622|Caenorhabditis elegans Hypothetical pr...    27   7.1  
Z78416-3|CAB01680.2|  631|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AF003141-13|AAK21490.1|  549|Caenorhabditis elegans Hypothetical...    27   9.4  

>Z73425-6|CAB61014.1|  382|Caenorhabditis elegans Hypothetical
           protein F12F6.3 protein.
          Length = 382

 Score = 98.7 bits (235), Expect = 3e-21
 Identities = 47/112 (41%), Positives = 62/112 (55%), Gaps = 7/112 (6%)
 Frame = +2

Query: 248 RNPASATQPCRMDTCFDFSKCGSDPKIFVYP-----SDGTVSASYRKVLSVIRESRYVTR 412
           +NP    + C M  CFDFSKC +  K++++P      +   S  Y K+L    ES + T 
Sbjct: 21  QNPTIERKQCTMSNCFDFSKCSTSKKVYIHPMEKRFEESPQSVIYSKILKHFLESNHYTN 80

Query: 413 DPNEACLFVPAIDTLDADPLSSEHVSDVASRLSRL--PYWRNGRNHLIFNLY 562
           DPNEAC+F+  IDT D D  S  +V +V   +  L    W NGRNHLIFN Y
Sbjct: 81  DPNEACIFLLGIDTTDRDVRSQNYVKNVNDYIESLDPSVWNNGRNHLIFNFY 132


>U94834-1|AAC47509.1|  378|Caenorhabditis elegans multiple exostoses
           homolog 1 protein.
          Length = 378

 Score = 98.7 bits (235), Expect = 3e-21
 Identities = 47/112 (41%), Positives = 62/112 (55%), Gaps = 7/112 (6%)
 Frame = +2

Query: 248 RNPASATQPCRMDTCFDFSKCGSDPKIFVYP-----SDGTVSASYRKVLSVIRESRYVTR 412
           +NP    + C M  CFDFSKC +  K++++P      +   S  Y K+L    ES + T 
Sbjct: 17  QNPTIERKQCTMSNCFDFSKCSTSKKVYIHPMEKRFEESPQSVIYSKILKHFLESNHYTN 76

Query: 413 DPNEACLFVPAIDTLDADPLSSEHVSDVASRLSRL--PYWRNGRNHLIFNLY 562
           DPNEAC+F+  IDT D D  S  +V +V   +  L    W NGRNHLIFN Y
Sbjct: 77  DPNEACIFLLGIDTTDRDVRSQNYVKNVNDYIESLDPSVWNNGRNHLIFNFY 128


>AB241458-1|BAF48989.1|  382|Caenorhabditis elegans heparan sulfate
           polymerase protein.
          Length = 382

 Score = 98.7 bits (235), Expect = 3e-21
 Identities = 47/112 (41%), Positives = 62/112 (55%), Gaps = 7/112 (6%)
 Frame = +2

Query: 248 RNPASATQPCRMDTCFDFSKCGSDPKIFVYP-----SDGTVSASYRKVLSVIRESRYVTR 412
           +NP    + C M  CFDFSKC +  K++++P      +   S  Y K+L    ES + T 
Sbjct: 21  QNPTIERKQCTMSNCFDFSKCSTSKKVYIHPMEKRFEESPQSVIYSKILKHFLESNHYTN 80

Query: 413 DPNEACLFVPAIDTLDADPLSSEHVSDVASRLSRL--PYWRNGRNHLIFNLY 562
           DPNEAC+F+  IDT D D  S  +V +V   +  L    W NGRNHLIFN Y
Sbjct: 81  DPNEACIFLLGIDTTDRDVRSQNYVKNVNDYIESLDPSVWNNGRNHLIFNFY 132


>AC024753-8|AAF60455.1|  174|Caenorhabditis elegans Hypothetical
           protein Y23H5B.8 protein.
          Length = 174

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/70 (21%), Positives = 31/70 (44%)
 Frame = +2

Query: 101 LLLFMSCAFLLYCYYGNTSFKSDTCKSKLNELPSFATLDDLHLKPSRQKRNPASATQPCR 280
           +LLF+   F ++          + C +KLN++ +   L++L L+ ++  +N         
Sbjct: 4   ILLFLLSTFFVFSIVSGQQTNYENCLTKLNKMKNI--LNNLKLETTKHGKNVKIGNLETF 61

Query: 281 MDTCFDFSKC 310
              C D + C
Sbjct: 62  YHMCIDTTNC 71


>Z81576-1|CAB04643.2|  312|Caenorhabditis elegans Hypothetical
           protein R10E8.1 protein.
          Length = 312

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 9/49 (18%)
 Frame = +2

Query: 431 LFVPAI---DTLDADPLSSEHVSDVASR------LSRLPYWRNGRNHLI 550
           +F PAI   +TLD+ PL S H+S           L++LP+W+  ++ LI
Sbjct: 142 MFAPAIAITETLDSGPLKSIHLSTDKEEEMDCDGLTKLPHWKRIKSLLI 190


>Z93383-2|CAB07624.1|  253|Caenorhabditis elegans Hypothetical
           protein F54B8.2 protein.
          Length = 253

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
 Frame = +3

Query: 483 MYLMSLHVYRDYLIGEMV--EIISYL 554
           +YL S+  YRDY IG++V  ++I Y+
Sbjct: 29  LYLNSIPKYRDYTIGQIVQNDVIEYI 54


>AY494975-1|AAR87492.1|  486|Caenorhabditis elegans
           collagen/olfactomedin domain containingprotein 2
           protein.
          Length = 486

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 491 DVASRLSRLPYWRNGRNHLIFN 556
           D   ++ RLPY  +G NH+IFN
Sbjct: 291 DHVGKVHRLPYIFDGTNHVIFN 312


>AF000262-4|AAN60526.2|  486|Caenorhabditis elegans Colmedin
           (collagen plus olfactomedin)family protein 2 protein.
          Length = 486

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 491 DVASRLSRLPYWRNGRNHLIFN 556
           D   ++ RLPY  +G NH+IFN
Sbjct: 291 DHVGKVHRLPYIFDGTNHVIFN 312


>Z81142-3|CAB03505.1|  491|Caenorhabditis elegans Hypothetical
           protein ZK1037.6 protein.
          Length = 491

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/38 (28%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -1

Query: 375 TFLYEALTVPSLGY-TKIFGSLPHLEKSKHVSIRQGCV 265
           + ++ +  +P+L   ++I+G   H+E S H S  +GC+
Sbjct: 426 SLIFSSSNLPTLNLVSEIYGDAVHIEFSTHDSYSEGCL 463


>Z75537-2|CAA99835.1|  622|Caenorhabditis elegans Hypothetical
           protein F18E2.2 protein.
          Length = 622

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +3

Query: 231 NHLDKNAILLLQHSLVVWIHVSTFLNVEVIQKFL---CTQVMGL 353
           NHLD NA++ L + L  W    T L V   Q FL   CT ++ L
Sbjct: 256 NHLDLNAVIWLDNYLQTW--KKTLLIVSHDQGFLDSVCTDIIHL 297


>Z78416-3|CAB01680.2|  631|Caenorhabditis elegans Hypothetical
           protein C23H4.3 protein.
          Length = 631

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -1

Query: 516 NLDRREATSDTCSDDKGSASSVS-IAGTNKHASFGSLVTYLDSLITDNTFLYEALTVPSL 340
           NLD     +DT   D+ +A  V  +    +   FG L      L+++N FLY+A+   S 
Sbjct: 127 NLDSAIMFNDTFILDRYAAEDVVFVIPAVRLGVFGQLYFGPSDLLSENLFLYDAVQALSF 186

Query: 339 GYTKI 325
            +++I
Sbjct: 187 VHSEI 191


>AF003141-13|AAK21490.1|  549|Caenorhabditis elegans Hypothetical
           protein W02D3.11a protein.
          Length = 549

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 410 RDPNEACLFVPAIDTLDADPLSSEHVSDVASRLSRLPYWRNG 535
           RDP ++ +  P      +DP ++E         SR PYWR G
Sbjct: 325 RDPRDSRMPDPRDSRALSDPYAAESRYSEYGYESREPYWRGG 366


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,348,867
Number of Sequences: 27780
Number of extensions: 285394
Number of successful extensions: 821
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)