Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27m22
         (474 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   149   1e-36
Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical pr...    31   0.42 
U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical p...    31   0.56 
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z93377-1|CAB07573.1|  340|Caenorhabditis elegans Hypothetical pr...    27   5.2  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    27   5.2  
AC024813-3|AAK27881.1|  461|Caenorhabditis elegans Est (ever sho...    27   5.2  
AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever sho...    27   5.2  
AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever sho...    27   5.2  
AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical...    27   6.9  
Z81086-9|CAD30440.1|   75|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z70718-11|CAA94680.1|  590|Caenorhabditis elegans Hypothetical p...    27   9.1  
Z68301-10|CAA92629.1|  590|Caenorhabditis elegans Hypothetical p...    27   9.1  
AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    27   9.1  
AF067624-4|AAM15592.1|  644|Caenorhabditis elegans Hypothetical ...    27   9.1  
AF067624-2|AAC17562.3|  634|Caenorhabditis elegans Hypothetical ...    27   9.1  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  149 bits (360), Expect = 1e-36
 Identities = 71/104 (68%), Positives = 81/104 (77%)
 Frame = +3

Query: 105 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 284
           ARPLV+VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V+ +AG Q 
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQH 61

Query: 285 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK 416
           SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K
Sbjct: 62  SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLK 105


>Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical
           protein F40F8.11 protein.
          Length = 472

 Score = 31.1 bits (67), Expect = 0.42
 Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
 Frame = +3

Query: 237 NSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR---SGQGAFGNMCRGGRMFA 407
           N R    V K   H+    SW T     +  R  GGG  R   SG    G   RGGR   
Sbjct: 137 NKRGTKGVQKMPNHRLEGNSWETNGLQNQTARGGGGGRGRGRGSGGRGRGGFNRGGRFNG 196

Query: 408 PTKP 419
             KP
Sbjct: 197 APKP 200


>U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical
           protein ZK180.6 protein.
          Length = 701

 Score = 30.7 bits (66), Expect = 0.56
 Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 324 IPRVRGGGTHRSGQGAFGNMCRGGRMF-APTKPLAALAPS 440
           +P   GGG   S Q A GN C GG    AP    A LAP+
Sbjct: 26  LPGAGGGGCCSSAQPACGNPCGGGGAAPAPVYAAAPLAPA 65


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 393 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 310
           HHD  +++H  + ++ HHHGH   G  H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145


>Z93377-1|CAB07573.1|  340|Caenorhabditis elegans Hypothetical
           protein F13A7.1 protein.
          Length = 340

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +3

Query: 270 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPLAALAPSRQP 449
           A   ++A+  G G AV++I    G  +   G GA G+  +GG    P   ++     R  
Sbjct: 168 AAQGSAAQGAGGGGAVSQISAAPG--SMAQGVGAPGSAAQGGGAQGPVSQISVTQGGRGG 225

Query: 450 PTAG 461
            TAG
Sbjct: 226 GTAG 229


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
 Frame = -1

Query: 420 GASWGRTYVHHDTCYRRHPDRTYEYHH--HGHAEFGRQH 310
           GA +G  + HH   +   P   +  HH  H H   G  H
Sbjct: 617 GAGYGAHHGHHGAHHHHAPHHEHHEHHGDHHHGSHGVHH 655


>AC024813-3|AAK27881.1|  461|Caenorhabditis elegans Est (ever
           shorter telomeres) homologprotein 1, isoform b protein.
          Length = 461

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
 Frame = +3

Query: 108 RPLVSVYSEKSETVQGAAKPLPFVFKA--PIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 281
           RP + +Y        G+ K L    +   P RP+ +N    +MS NSR+    +     +
Sbjct: 19  RPEIQIYRPGMLRQGGSTKSLSSTNEEARPPRPEKLNTTTTTMSGNSRRRSNDTDSVTSR 78

Query: 282 TSAESWGTGRAVARIPRVRGGGTHRSGQG 368
             + S      V      RGGG +R  +G
Sbjct: 79  GGSGSTTPDANVINAMNERGGGRNRFEKG 107


>AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever
           shorter telomeres) homologprotein 1, isoform c protein.
          Length = 1027

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
 Frame = +3

Query: 108 RPLVSVYSEKSETVQGAAKPLPFVFKA--PIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 281
           RP + +Y        G+ K L    +   P RP+ +N    +MS NSR+    +     +
Sbjct: 19  RPEIQIYRPGMLRQGGSTKSLSSTNEEARPPRPEKLNTTTTTMSGNSRRRSNDTDSVTSR 78

Query: 282 TSAESWGTGRAVARIPRVRGGGTHRSGQG 368
             + S      V      RGGG +R  +G
Sbjct: 79  GGSGSTTPDANVINAMNERGGGRNRFEKG 107


>AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever
           shorter telomeres) homologprotein 1, isoform a protein.
          Length = 1241

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
 Frame = +3

Query: 108 RPLVSVYSEKSETVQGAAKPLPFVFKA--PIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 281
           RP + +Y        G+ K L    +   P RP+ +N    +MS NSR+    +     +
Sbjct: 19  RPEIQIYRPGMLRQGGSTKSLSSTNEEARPPRPEKLNTTTTTMSGNSRRRSNDTDSVTSR 78

Query: 282 TSAESWGTGRAVARIPRVRGGGTHRSGQG 368
             + S      V      RGGG +R  +G
Sbjct: 79  GGSGSTTPDANVINAMNERGGGRNRFEKG 107


>AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical
           protein Y53F4B.36 protein.
          Length = 297

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 12/58 (20%), Positives = 25/58 (43%)
 Frame = +3

Query: 90  MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 263
           MS++V  P +S        V    + + F++  P    ++ D H+   + +    CV+
Sbjct: 182 MSMAVTSPYLSKLDRLPIVVSACKRAMCFIYDRPTNSIILLDTHMHFKRRAVSVLCVA 239


>Z81086-9|CAD30440.1|   75|Caenorhabditis elegans Hypothetical
           protein F53B6.9 protein.
          Length = 75

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 402 TYVHHDTCYRRHPDRTYEYHHHGHAEF 322
           TY HH   Y      ++E+HHH H  +
Sbjct: 20  TYAHHSHSY----SHSHEHHHHHHGGY 42


>Z70718-11|CAA94680.1|  590|Caenorhabditis elegans Hypothetical
           protein W01B6.9 protein.
          Length = 590

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -3

Query: 196 RMGALNTNGRGLAAPCTVSLFSEYT-DTKGRATDRLISL 83
           + G LN NGR   A      F++YT  T  R TD   SL
Sbjct: 7   KTGGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSL 45


>Z68301-10|CAA92629.1|  590|Caenorhabditis elegans Hypothetical
           protein W01B6.9 protein.
          Length = 590

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -3

Query: 196 RMGALNTNGRGLAAPCTVSLFSEYT-DTKGRATDRLISL 83
           + G LN NGR   A      F++YT  T  R TD   SL
Sbjct: 7   KTGGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSL 45


>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 18/59 (30%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
 Frame = -1

Query: 432 PTPPGASWGRTYVHHDTCYRRHPDRT--YEYHHHGHAEFGRQHVQYPMIQHWFGDQPPC 262
           P  PG        HH     R P R   + +HHHG   F   H  +     W    PPC
Sbjct: 388 PHCPGRHGHHGPPHHHHHDGRSPSRHGHHHHHHHGCRPFPPHHGHHHFPPFW----PPC 442


>AF067624-4|AAM15592.1|  644|Caenorhabditis elegans Hypothetical
           protein M01B12.4b protein.
          Length = 644

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -3

Query: 205 RSGRMGALNTNGRGLAAPCTVSLFSEYTDTK--GRATDRL 92
           R  R+ A+    RG+A+P T +L     D K  GRA D L
Sbjct: 568 RKSRLAAILAKSRGMASPMTNTLPPTADDIKESGRANDVL 607


>AF067624-2|AAC17562.3|  634|Caenorhabditis elegans Hypothetical
           protein M01B12.4a protein.
          Length = 634

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -3

Query: 205 RSGRMGALNTNGRGLAAPCTVSLFSEYTDTK--GRATDRL 92
           R  R+ A+    RG+A+P T +L     D K  GRA D L
Sbjct: 558 RKSRLAAILAKSRGMASPMTNTLPPTADDIKESGRANDVL 597


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,598,114
Number of Sequences: 27780
Number of extensions: 226370
Number of successful extensions: 849
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)