Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27m22
         (474 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    24   0.72 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   3.8  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   5.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   5.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   6.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   8.9  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   8.9  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 24.2 bits (50), Expect = 0.72
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 426 PPGASWGRTYVHHDTCYRRHPDRTYE 349
           P G + G T +HH   Y R   + YE
Sbjct: 145 PRGKNLGGTTLHHGMAYHRGHRKDYE 170


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -1

Query: 348 YHHHGHAEFGRQHVQY 301
           +HHH H     QH+ Y
Sbjct: 351 HHHHHHQTQSLQHLHY 366


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 360 GQGAFGNMCRGGRMFAP 410
           G G FG++CRG     P
Sbjct: 640 GGGEFGDVCRGKLKLPP 656


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 78  SEAIPLKYTLIAVIKTIRHATEV 10
           SE++PL+  L A ++T    TE+
Sbjct: 803 SESMPLQSALTAAVQTSVGVTEI 825


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 78  SEAIPLKYTLIAVIKTIRHATEV 10
           SE++PL+  L A ++T    TE+
Sbjct: 893 SESMPLQSALTAAVQTSVGVTEI 915


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 12   PPWHGGWSLSPLLVY 56
            PPW  G  ++P L+Y
Sbjct: 997  PPWLEGVHVTPELIY 1011


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 15  PWHGGWSLSPLLVYISE 65
           PW  G  +  L  Y+SE
Sbjct: 99  PWQWGLGICKLRAYVSE 115


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = +3

Query: 183 KAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSA 290
           K P++   + D+ + M    RQP+ +   A  + +A
Sbjct: 59  KLPVKAITLPDLSIPMQLGRRQPFSLFIPAHRKIAA 94


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,841
Number of Sequences: 438
Number of extensions: 2553
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)