Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27m17
         (598 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79995-1|BAA11490.2| 1203|Homo sapiens KIAA0173 protein.               33   0.58 
BC021707-1|AAH21707.1| 1199|Homo sapiens tubulin tyrosine ligase...    33   0.58 
AK093255-1|BAC04111.1|  623|Homo sapiens protein ( Homo sapiens ...    31   3.1  

>D79995-1|BAA11490.2| 1203|Homo sapiens KIAA0173 protein.
          Length = 1203

 Score = 33.5 bits (73), Expect = 0.58
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = +2

Query: 275  TMSASQKESWAAAIDLLTNDECRLLLEVEDFFNDDCDLLKNFPS 406
            T     ++ +A+ +D+LT D+ R+L+E+ED F+      + FPS
Sbjct: 990  TQKIPDQDFYASVLDVLTPDDVRILVEMEDEFSRRGQFERIFPS 1033


>BC021707-1|AAH21707.1| 1199|Homo sapiens tubulin tyrosine ligase-like
            family, member 4 protein.
          Length = 1199

 Score = 33.5 bits (73), Expect = 0.58
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = +2

Query: 275  TMSASQKESWAAAIDLLTNDECRLLLEVEDFFNDDCDLLKNFPS 406
            T     ++ +A+ +D+LT D+ R+L+E+ED F+      + FPS
Sbjct: 986  TQKIPDQDFYASVLDVLTPDDVRILVEMEDEFSRRGQFERIFPS 1029


>AK093255-1|BAC04111.1|  623|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35936 fis, clone TESTI2011448, weakly similar to
           Human l(3)mbt protein homolog mRNA. ).
          Length = 623

 Score = 31.1 bits (67), Expect = 3.1
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = -1

Query: 421 DLRCS--ARKVFKQITIIIEEILNFEQQTALIVSEQIDGRSP*LLLTRTHCCNDLVPRMR 248
           D+R S  AR    ++   ++ +L  E+       EQIDG++  LLLT+T    D+V  M+
Sbjct: 534 DIRASQVARWTVDEVAEFVQSLLGCEEHAKCFKKEQIDGKA-FLLLTQT----DIVKVMK 588

Query: 247 IKV 239
           IK+
Sbjct: 589 IKL 591


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,795,109
Number of Sequences: 237096
Number of extensions: 1439536
Number of successful extensions: 2165
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2164
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)