Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27m17
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83233-8|CAB05759.2|  378|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AC024875-5|AAM44401.1|  203|Caenorhabditis elegans Rab family pr...    28   4.4  
U80446-5|AAK73881.1|  152|Caenorhabditis elegans Brother (drosop...    27   7.7  

>Z83233-8|CAB05759.2|  378|Caenorhabditis elegans Hypothetical
           protein K06B4.8 protein.
          Length = 378

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 205 KTPTSLDINPSGLLFAFVELNHYNNEC 285
           KTP  LD     +L+ F+ELN  N EC
Sbjct: 232 KTPALLDQTSCMVLYKFIELNITNEEC 258


>AC024875-5|AAM44401.1|  203|Caenorhabditis elegans Rab family
           protein 18, isoform b protein.
          Length = 203

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 494 NDLLQQLDSQCKQENIFSNWLEEKVDLPS 580
           N  +Q++D+ C  +NI    +  K+D+P+
Sbjct: 103 NHWMQEVDTYCTNDNIIKMMVANKIDMPN 131


>U80446-5|AAK73881.1|  152|Caenorhabditis elegans Brother
           (drosophila tx factor partner)homolog protein 1 protein.
          Length = 152

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 256 RMRIKVQRD*CLMMLVFCEDGLTCPVRAPFWHQS 155
           R R+ V+RD   M L FC+ G+  PV+   W Q+
Sbjct: 43  RFRVHVERD--EMPLTFCKTGINIPVKLE-WSQT 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,465,889
Number of Sequences: 27780
Number of extensions: 236300
Number of successful extensions: 541
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)