Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27m15
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    29   0.67 
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    25   6.2  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    25   6.2  
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    25   6.2  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    25   8.3  
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    25   8.3  

>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 28.7 bits (61), Expect = 0.67
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = -2

Query: 561 QGTQMHMRHRLRRKPLLLEAKISARGVRYKSATAYCDQTVLVKWS 427
           Q T   + H   RK   L A +S   V +   T  CD TVL+ WS
Sbjct: 453 QTTANAVEHFKLRKITALSAALSLGTVLFCLHTFLCDSTVLMTWS 497


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -1

Query: 562 PGYSDAHASPPSTETVAAGGKNKCAWRSVQECDSVLRSDGTGKVVI 425
           P +S A  S  +T    + G ++  ++S+  CDS LRS     +V+
Sbjct: 305 PSFS-ASRSAETTPPQGSVGLHELVYQSILACDSELRSPLLNNIVV 349


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +2

Query: 296 CNYYRRDRAVCRKSKTPTPQDVSWHSSVKPLFGT*LYS*DREINDHFTSTV*SQY 460
           C  Y    A  +   + +P ++S HS+ +PL  T + S   +  D F+ +  S +
Sbjct: 63  CEGYPNSAAQMQAMGSVSPPELSVHSAQQPLIPTSIASSSAQTGDTFSGSSQSNF 117


>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 15/62 (24%), Positives = 28/62 (45%)
 Frame = -2

Query: 288 PKSRIRAVMTASMRLITLAFSRSTSRHISKARGFIPLLILSTRSEVVNKKK*ITQNWPNY 109
           P+   R V   +  L     SRS+S H  K+     +  ++++ E ++    + Q+ PN 
Sbjct: 136 PEQNTRPVSEVNASLDLNTASRSSSAHSVKSTSSATVTNVTSKKEAISATTSLAQSSPNL 195

Query: 108 IS 103
            S
Sbjct: 196 AS 197


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 444 PSDRNTLSHSCTERHAHLFLPP 509
           P+     SH C   H+HL  PP
Sbjct: 617 PASVKLTSHKCNHLHSHLDKPP 638


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 15/65 (23%), Positives = 29/65 (44%)
 Frame = +3

Query: 390 LEHNYTREIVRLMTTLPVPSDRNTLSHSCTERHAHLFLPPAATVSVEGGDACASEYPGTA 569
           L H+ T +       + +PS   T +++ +  H+ L  P A+T++     A     P  A
Sbjct: 401 LNHSVTGDGEAKQVVITMPSTHFTPANNSSANHSPLMAPNASTLNPSSLGASNLSQPSLA 460

Query: 570 SSKSA 584
           +  S+
Sbjct: 461 NHLSS 465


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,313,675
Number of Sequences: 5004
Number of extensions: 43640
Number of successful extensions: 91
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)