Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27m15
         (592 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29487-1|AAA68768.1|  253|Caenorhabditis elegans 2 (zwei) ig-dom...    29   1.9  
AF456251-1|AAL59609.1|  253|Caenorhabditis elegans secreted 2-im...    29   1.9  
AL132860-11|CAB60517.1|  440|Caenorhabditis elegans Hypothetical...    27   10.0 
AF069986-1|AAC39136.1|  440|Caenorhabditis elegans nitrilase and...    27   10.0 

>U29487-1|AAA68768.1|  253|Caenorhabditis elegans 2 (zwei) ig-domain
           protein protein4 protein.
          Length = 253

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 414 IVRLMTTLPVPSDRNTLSHSCTERHAHLFLPPAATVSVEG-GDACASEY 557
           IV  + T+  PS  N+ ++SC   + H  +   A V +EG    C S +
Sbjct: 110 IVASILTIQCPSAENSGTYSCVGYNGHQTIETVAEVEIEGEASGCRSNH 158


>AF456251-1|AAL59609.1|  253|Caenorhabditis elegans secreted
           2-immunoglobulin-domainprotein ZIG-4 protein.
          Length = 253

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 414 IVRLMTTLPVPSDRNTLSHSCTERHAHLFLPPAATVSVEG-GDACASEY 557
           IV  + T+  PS  N+ ++SC   + H  +   A V +EG    C S +
Sbjct: 110 IVASILTIQCPSAENSGTYSCVGYNGHQTIETVAEVEIEGEASGCRSNH 158


>AL132860-11|CAB60517.1|  440|Caenorhabditis elegans Hypothetical
           protein Y56A3A.13 protein.
          Length = 440

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 481 NATRTYFCLQQQRFPSKAVTHVHLSTLEQR 570
           N T T  C+Q  +   + V HVH+  L +R
Sbjct: 370 NVTSTTICVQDGKDAGQTVPHVHIHILPRR 399


>AF069986-1|AAC39136.1|  440|Caenorhabditis elegans nitrilase and
           fragile histidinetriad fusion protein NitFhit protein.
          Length = 440

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 481 NATRTYFCLQQQRFPSKAVTHVHLSTLEQR 570
           N T T  C+Q  +   + V HVH+  L +R
Sbjct: 370 NVTSTTICVQDGKDAGQTVPHVHIHILPRR 399


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,090,698
Number of Sequences: 27780
Number of extensions: 258723
Number of successful extensions: 756
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)