Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27m15
         (592 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    27   0.18 
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    23   3.0  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    21   6.8  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    21   6.8  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    21   6.8  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    21   6.8  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   6.8  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    21   6.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   6.8  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   9.0  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 26.6 bits (56), Expect = 0.18
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 462 LSHSCTERHAHLFLPPAATVSVEGGDACASEYPGTASSKSA 584
           + H+ ++ H HL  PPA + S     A AS+ P TAS  S+
Sbjct: 664 VQHTQSQLHLHLTSPPARSPS---SQAQASQCPQTASLLSS 701


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 113 LGQFCVIYFFLLTTSLLV 166
           +G+  +I FF+LTT L++
Sbjct: 1   MGRITIIRFFVLTTMLMM 18


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -2

Query: 429 SLISRSHEYNYVPNNGFTELC 367
           S +S ++ Y+   NN + +LC
Sbjct: 83  SSLSNNYNYSNYNNNNYKQLC 103


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -2

Query: 429 SLISRSHEYNYVPNNGFTELC 367
           S +S ++ Y+   NN + +LC
Sbjct: 83  SSLSNNYNYSNYNNNNYKQLC 103


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -2

Query: 429 SLISRSHEYNYVPNNGFTELC 367
           S +S ++ Y+   NN + +LC
Sbjct: 83  SSLSNNYNYSNYNNNNYKQLC 103


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -2

Query: 429 SLISRSHEYNYVPNNGFTELC 367
           S +S ++ Y+   NN + +LC
Sbjct: 83  SSLSNNYNYSNYNNNNYKQLC 103


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -2

Query: 429 SLISRSHEYNYVPNNGFTELC 367
           S +S ++ Y+   NN + +LC
Sbjct: 83  SSLSNNYNYSNYNNNNYKQLC 103


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -2

Query: 429 SLISRSHEYNYVPNNGFTELC 367
           S +S ++ Y+   NN + +LC
Sbjct: 83  SSLSNNYNYSNYNNNNYKQLC 103


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +3

Query: 444 PSDRNTLSHSCTERHAHLFLPPAATVSVEGGDA 542
           PSD +TL +   E    LF P     +   G A
Sbjct: 568 PSDCDTLEYRNGEVTTPLFTPAVGVAAASAGGA 600


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 487 TRTYFCLQQQRFPSKAVTHVHLSTLEQR 570
           T   + +QQ  FP   +  + L+T +QR
Sbjct: 418 TLPQYTVQQLDFPGIEIADIKLTTNQQR 445


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,111
Number of Sequences: 438
Number of extensions: 3438
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)