Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27m13
         (418 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|c...    32   0.041
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.13 
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       29   0.29 
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    27   1.5  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    25   6.2  

>SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 50

 Score = 31.9 bits (69), Expect = 0.041
 Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
 Frame = -3

Query: 281 HAAPDSAPDGDVCDCLNTVGC-DCLNTVGCDCLKTVGCDC 165
           H     +  G  CDC +  GC DC  + GC       C C
Sbjct: 3   HTTQCKSKQGKPCDCQSKCGCQDCKESCGCKSSAVDNCKC 42


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 30.3 bits (65), Expect = 0.13
 Identities = 14/25 (56%), Positives = 14/25 (56%)
 Frame = +1

Query: 172 QPTVFKQSQPTVFKQSQPTVFKQSQ 246
           QPT F Q QPT F   QP  F Q Q
Sbjct: 126 QPTGFVQPQPTGFMSQQPASFMQPQ 150



 Score = 27.5 bits (58), Expect = 0.88
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = +1

Query: 151 PAVFKQSQPTVFKQSQPTVFKQSQPT 228
           P  F Q QPT F   QP  F Q Q T
Sbjct: 127 PTGFVQPQPTGFMSQQPASFMQPQRT 152


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 29.1 bits (62), Expect = 0.29
 Identities = 15/27 (55%), Positives = 16/27 (59%)
 Frame = +1

Query: 166 QSQPTVFKQSQPTVFKQSQPTVFKQSQ 246
           Q QPT F Q QPT F + Q T F Q Q
Sbjct: 310 QPQPTGFLQQQPTGFIRPQNTGFVQPQ 336



 Score = 24.2 bits (50), Expect = 8.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 190 QSQPTVFKQSQPTVFKQSQTS 252
           Q QPT F Q QPT F + Q +
Sbjct: 310 QPQPTGFLQQQPTGFIRPQNT 330


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 224 GCDCLNTVGCDCLKTVGCDCL 162
           GC+C +  GCD      C+CL
Sbjct: 259 GCNCSSLGGCDLNNPSRCECL 279



 Score = 26.6 bits (56), Expect = 1.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 245 CDCLNTVGCDCLNTVGCDCL 186
           C+C +  GCD  N   C+CL
Sbjct: 260 CNCSSLGGCDLNNPSRCECL 279


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = +2

Query: 314 ANEPLTR--TYHSQGVTYHVHGQVNISND 394
           AN P++   T  S G   H H Q+N  N+
Sbjct: 247 ANTPISNNVTVESTGTNLHTHSQLNPENE 275


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,091,797
Number of Sequences: 5004
Number of extensions: 14179
Number of successful extensions: 38
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)