Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27m13
         (418 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0142 + 5877480-5879663,5879783-5879898,5880749-5882419,588...    32   0.21 
04_04_1211 + 31783076-31783680,31784162-31784427,31784546-31785378     29   2.0  
11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,223...    28   3.5  
07_01_0282 - 2070027-2070041,2074763-2075062,2075154-2075722,207...    27   8.0  
01_05_0532 - 22992520-22992879,22993323-22993403,22993565-229936...    27   8.0  

>03_02_0142 +
           5877480-5879663,5879783-5879898,5880749-5882419,
           5882570-5882618,5882703-5882941,5883073-5883174,
           5883634-5883862
          Length = 1529

 Score = 31.9 bits (69), Expect = 0.21
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 166 QSQPTVFKQSQPTVFKQSQPTVFKQSQTSPSGAESG 273
           Q+QP+   QS P     SQPT F  S+   +G ++G
Sbjct: 850 QTQPSAASQSLPPGHPSSQPTPFNSSEIDSTGQQTG 885


>04_04_1211 + 31783076-31783680,31784162-31784427,31784546-31785378
          Length = 567

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 248 VCDCLNTVGCDCLNTVGCDCLKTVGCDCLKTAGL 147
           +CD L+ +G D   T+    +   GCD +  AG+
Sbjct: 528 ICDLLDDIGADGDKTIVVSIVPRCGCDSVTVAGV 561


>11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,
            2233053-2233513,2233593-2233717,2233801-2234098,
            2235004-2236234,2236562-2237233,2237329-2238539
          Length = 1884

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 130  LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPT 228
            +  +   P V K++ P V  ++QPT   ++QPT
Sbjct: 1426 IVKVEAQPVVKKETWPVVKMETQPTANVEAQPT 1458



 Score = 27.5 bits (58), Expect = 4.6
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 139  ISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQ 246
            +   P V  ++QP V K++ P V  ++QPT   ++Q
Sbjct: 1421 VEAPPIVKVEAQPVVKKETWPVVKMETQPTANVEAQ 1456


>07_01_0282 -
           2070027-2070041,2074763-2075062,2075154-2075722,
           2075812-2076337
          Length = 469

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 66  LIWRLMAGW*RYCSLGCE 13
           L WR M G   YC LGC+
Sbjct: 316 LCWRYMYGGDDYCDLGCD 333


>01_05_0532 -
           22992520-22992879,22993323-22993403,22993565-22993639,
           22994140-22994301
          Length = 225

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 136 NISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQTSP 255
           N S  P+     Q TV    +P++  QS+ T+F  + +SP
Sbjct: 132 NSSIQPSAGSYGQATVGFAPRPSISDQSKNTIFSNALSSP 171


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,601,755
Number of Sequences: 37544
Number of extensions: 107842
Number of successful extensions: 261
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)