Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27m11
         (439 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88315-15|AAB42365.1|  351|Caenorhabditis elegans Annexin family...    32   0.16 
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr...    30   0.85 
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr...    30   0.85 
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr...    30   0.85 
AF022976-4|AAC69083.2|  345|Caenorhabditis elegans Serpentine re...    28   3.4  
Z70680-5|CAA94574.1|  402|Caenorhabditis elegans Hypothetical pr...    27   4.5  
U42834-4|AAA83584.1| 2229|Caenorhabditis elegans Hypothetical pr...    27   4.5  
AF100656-6|AAF99961.1|  240|Caenorhabditis elegans Hypothetical ...    27   4.5  
AC006722-1|AAK68420.1|  401|Caenorhabditis elegans Hypothetical ...    27   6.0  
AC006645-6|AAF39847.1|  462|Caenorhabditis elegans Hypothetical ...    27   6.0  
Z75546-5|CAA99893.2|  335|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z66496-6|CAA91281.3|  191|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z48585-12|CAI46589.1|  191|Caenorhabditis elegans Hypothetical p...    27   7.9  
AF039044-4|AAG24122.3|  328|Caenorhabditis elegans Serpentine re...    27   7.9  
AF016445-8|AAC69052.1|  244|Caenorhabditis elegans Hypothetical ...    27   7.9  

>U88315-15|AAB42365.1|  351|Caenorhabditis elegans Annexin family
           protein 4 protein.
          Length = 351

 Score = 32.3 bits (70), Expect = 0.16
 Identities = 11/36 (30%), Positives = 24/36 (66%)
 Frame = +1

Query: 1   EGVTGPFLHIMASSLQSKWICLRLNDAIIKRHVLVL 108
           EGV G  +H++  + + + + +R+ND ++ +HV +L
Sbjct: 156 EGVVGKMMHLLLCNNREEGLGVRVNDELVDKHVKIL 191


>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 29.9 bits (64), Expect = 0.85
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +2

Query: 173 FNFATTRTCARL*KTTTITVCKYLKRPPTTCATSGTILNAHSKRQCWATCVC--LATNRQ 346
           FNF  T   + +   T+       + P TTC  +GT+LN  ++ Q   TC C  L   +Q
Sbjct: 280 FNFRRTGRFSCMQLLTSPAPPTTTQAPVTTCFNNGTLLNVANQGQ---TCFCSELFNGKQ 336

Query: 347 C 349
           C
Sbjct: 337 C 337


>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 29.9 bits (64), Expect = 0.85
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +2

Query: 173 FNFATTRTCARL*KTTTITVCKYLKRPPTTCATSGTILNAHSKRQCWATCVC--LATNRQ 346
           FNF  T   + +   T+       + P TTC  +GT+LN  ++ Q   TC C  L   +Q
Sbjct: 280 FNFRRTGRFSCMQLLTSPAPPTTTQAPVTTCFNNGTLLNVANQGQ---TCFCSELFNGKQ 336

Query: 347 C 349
           C
Sbjct: 337 C 337


>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 29.9 bits (64), Expect = 0.85
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +2

Query: 173 FNFATTRTCARL*KTTTITVCKYLKRPPTTCATSGTILNAHSKRQCWATCVC--LATNRQ 346
           FNF  T   + +   T+       + P TTC  +GT+LN  ++ Q   TC C  L   +Q
Sbjct: 280 FNFRRTGRFSCMQLLTSPAPPTTTQAPVTTCFNNGTLLNVANQGQ---TCFCSELFNGKQ 336

Query: 347 C 349
           C
Sbjct: 337 C 337


>AF022976-4|AAC69083.2|  345|Caenorhabditis elegans Serpentine
           receptor, class h protein37 protein.
          Length = 345

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +1

Query: 295 FKTPV--LGHMCVLSNKPPMYSFLKEWFLLPH 384
           F TP+  L H CVL+  P  +  LK W +  H
Sbjct: 26  FVTPIYPLAHYCVLTKSPKSFGILK-WIIYVH 56


>Z70680-5|CAA94574.1|  402|Caenorhabditis elegans Hypothetical
           protein C25G4.8 protein.
          Length = 402

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +1

Query: 34  ASSLQSKWICLR-LNDAIIKRHVLVLSEYADLKYLGFEKYKFFEYVIFQFCNDPHLCKII 210
           A S+QS  ICL  +   I K+  L+  + A   +    ++K FE  + +   + H C+ +
Sbjct: 249 ADSVQSIDICLTYMITGIYKKPALLSPKLAFEIFALAMQWKVFEPKVLKNSIEKHCCEEL 308

Query: 211 ENNYNYCMQI 240
           + NY   M +
Sbjct: 309 QKNYEDIMYV 318


>U42834-4|AAA83584.1| 2229|Caenorhabditis elegans Hypothetical
           protein F28B4.3 protein.
          Length = 2229

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 16/49 (32%), Positives = 20/49 (40%)
 Frame = +2

Query: 215 TTTITVCKYLKRPPTTCATSGTILNAHSKRQCWATCVCLATNRQCIRFL 361
           TTT+        P TTC   G +L   S    +  C  L T R C + L
Sbjct: 331 TTTVPAPTTTAAPLTTCQNGGQVLK-DSSGSPYCYCFGLYTGRDCSQML 378


>AF100656-6|AAF99961.1|  240|Caenorhabditis elegans Hypothetical
           protein F49F1.7 protein.
          Length = 240

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
 Frame = +2

Query: 185 TTRTCARL*KTTTITVCKYLKRPPTTCATSGTILNAHSKRQCWATCV-CLATNRQCIRFL 361
           TT++      T T    K  K   TT AT  T  +   K         C  ++  C  + 
Sbjct: 155 TTKSTETTETTETTKAIKTTKTTETTKATKTTTPSTTVKTTTTKPKPPCTDSSPNCTTWA 214

Query: 362 KNGFCCHT 385
           KNGFC +T
Sbjct: 215 KNGFCTNT 222


>AC006722-1|AAK68420.1|  401|Caenorhabditis elegans Hypothetical
           protein Y19D10A.7 protein.
          Length = 401

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 199 CKIIENNYNYCMQIFKAPADNMCDIRHNI 285
           CKI ENN N C    +   DN   +  N+
Sbjct: 220 CKICENNVNMCNDSLENLLDNCTHVNGNV 248


>AC006645-6|AAF39847.1|  462|Caenorhabditis elegans Hypothetical
           protein F56A4.9 protein.
          Length = 462

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 199 CKIIENNYNYCMQIFKAPADNMCDIRHNI 285
           CKI ENN N C    +   DN   +  N+
Sbjct: 265 CKICENNVNMCNDSLENLLDNCTHVNGNV 293


>Z75546-5|CAA99893.2|  335|Caenorhabditis elegans Hypothetical
           protein R05D11.6 protein.
          Length = 335

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +1

Query: 73  NDAIIKRHVLVLSEYADLKYLGFEKYKFFEYVIFQFCNDPHLCKI 207
           N  ++K HV  +++  ++     ++Y  F +   Q+C DP  C I
Sbjct: 153 NSCLMKWHVNKINQKIEIT---IDRYVAFRHTFSQYCVDPRDCAI 194


>Z66496-6|CAA91281.3|  191|Caenorhabditis elegans Hypothetical
           protein E04D5.4 protein.
          Length = 191

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 314 ATCVCLATNRQCIRFLKNGFC 376
           A   C+ T+ QC  + KNGFC
Sbjct: 146 APVACVDTSTQCAYWNKNGFC 166


>Z48585-12|CAI46589.1|  191|Caenorhabditis elegans Hypothetical
           protein E04D5.4 protein.
          Length = 191

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 314 ATCVCLATNRQCIRFLKNGFC 376
           A   C+ T+ QC  + KNGFC
Sbjct: 146 APVACVDTSTQCAYWNKNGFC 166


>AF039044-4|AAG24122.3|  328|Caenorhabditis elegans Serpentine
           receptor, class t protein17 protein.
          Length = 328

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 11/62 (17%), Positives = 26/62 (41%)
 Frame = -2

Query: 369 PFFKKRIHWRFVAKHTHVAQHWRFECAFNIVPDVAHVVGGRFKYLHTVIVVVFYNLAQVR 190
           P F   +   +V  H        +EC+ N    V H + G +     +++++ Y +  + 
Sbjct: 10  PVFDYNMTLLYVVFHNFELNKDAYECSKNETTHVFHTLRGSYYLTTGMLILILYTICLIA 69

Query: 189 VV 184
           ++
Sbjct: 70  II 71


>AF016445-8|AAC69052.1|  244|Caenorhabditis elegans Hypothetical
           protein T05B4.12 protein.
          Length = 244

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +2

Query: 248 RPPTTCATSGTILNAHSKRQCWATCVCLA--TNRQCIRFLKNGFCCHT 385
           R P+T A+SG++ +         TC   A  ++  C  + KNGFC +T
Sbjct: 187 RCPSTTASSGSVTSG--------TCTSYAADSSTSCTSWAKNGFCTNT 226


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,016,567
Number of Sequences: 27780
Number of extensions: 233261
Number of successful extensions: 636
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)