Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27m07
         (534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    25   5.4  
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    25   5.4  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    25   9.4  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    25   9.4  
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    25   9.4  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    25   9.4  

>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +2

Query: 323 CNYYRRDRAVCRKSKTPTPQDVSWHSSVKPLFGT*LYS*DREINDHFTSTV*SQY 487
           C  Y    A  +   + +P ++S HS+ +PL  T + S   +  D F+ +  S +
Sbjct: 63  CEGYPNSAAQMQAMGSVSPPELSVHSAQQPLIPTSIASSSAQTGDTFSGSSQSNF 117


>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 15/62 (24%), Positives = 28/62 (45%)
 Frame = -1

Query: 315 PKSRIRAVMTASMRLITLAFSRSTSRHISKARGFIPLLILSTRSEVVNKKK*ITQNWPNY 136
           P+   R V   +  L     SRS+S H  K+     +  ++++ E ++    + Q+ PN 
Sbjct: 136 PEQNTRPVSEVNASLDLNTASRSSSAHSVKSTSSATVTNVTSKKEAISATTSLAQSSPNL 195

Query: 135 IS 130
            S
Sbjct: 196 AS 197


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 468 LVKWSLISRSHEYNYV 421
           L KW L+  S E+NY+
Sbjct: 289 LEKWKLVENSQEFNYL 304


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 514 WRSVQECDSVLRSDGTGKVV 455
           W SV + D    +DG  KVV
Sbjct: 468 WNSVSKSDQTFENDGASKVV 487


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 413 TVSRNYARRHPAA*VSCSSYTQHDRDDNNCN 321
           T++ N A+ HP    S S+Y+ H  +D   +
Sbjct: 409 TLASNSAQAHPMGQQSDSNYSDHHNNDKRAH 439


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 532 GKNKCAWRSVQECDSVLRSDGTGKVVINL 446
           GK+K +W+ +Q CD     +   +VV ++
Sbjct: 4   GKSKFSWKDLQYCDKAGTQNSPLRVVAHI 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,076,903
Number of Sequences: 5004
Number of extensions: 37627
Number of successful extensions: 66
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)