Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27m06
(459 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0452 + 23774378-23775054,23775228-23775411,23775911-237759... 29 1.8
06_03_0721 - 23861426-23861929,23862013-23862219,23862598-238628... 29 1.8
08_01_0662 + 5714108-5714147,5714336-5715669,5716482-5716673,571... 29 2.4
03_05_0727 - 27170082-27170336,27170398-27170793,27171009-27171014 29 2.4
02_02_0612 - 12142192-12143253 28 3.1
04_04_0881 + 29055724-29059197 28 4.2
10_08_0299 - 16607152-16607322,16607465-16607785,16607870-166081... 27 5.5
08_01_0648 + 5602454-5602513,5602913-5603000,5603128-5604248,560... 27 9.6
05_07_0083 + 27580710-27580767,27580869-27580924,27581024-275811... 27 9.6
03_05_0937 - 28967038-28967245,28967348-28967556,28967584-289676... 27 9.6
02_04_0367 + 22399785-22399899,22400911-22401102,22401990-224021... 27 9.6
>11_06_0452 +
23774378-23775054,23775228-23775411,23775911-23775996,
23776116-23777010
Length = 613
Score = 29.1 bits (62), Expect = 1.8
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 336 IGNSTKRVVXYRHYQKNVLFLFS 268
I + T+R Y+HYQKN FLF+
Sbjct: 444 ISSLTRRFEQYQHYQKNFGFLFT 466
>06_03_0721 - 23861426-23861929,23862013-23862219,23862598-23862852,
23862858-23863212,23863533-23863834,23864006-23864281,
23864854-23865167,23865411-23865683,23865831-23866415,
23866806-23867132,23867270-23867337,23868670-23868746
Length = 1180
Score = 29.1 bits (62), Expect = 1.8
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 336 IGNSTKRVVXYRHYQKNVLFLFS 268
I + T+R Y+HYQKN FLF+
Sbjct: 1153 ISSLTRRFERYQHYQKNFGFLFT 1175
>08_01_0662 +
5714108-5714147,5714336-5715669,5716482-5716673,
5716769-5716958,5717398-5717477
Length = 611
Score = 28.7 bits (61), Expect = 2.4
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +3
Query: 354 DECDSENDVKENILQSNHSDLIDSCNFNANVISD 455
D+ D+++ + + L S H +L+D N+ +++ SD
Sbjct: 362 DDDDNDDILYDEYLNSRHGNLVDDYNYGSDIDSD 395
>03_05_0727 - 27170082-27170336,27170398-27170793,27171009-27171014
Length = 218
Score = 28.7 bits (61), Expect = 2.4
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +3
Query: 228 NPTIRKIFPDISVLKKEITHFFDNDDIXP-PAS-LNSQLGDINIDECDSEN 374
N ++R +FP I K I + D+D P P S LN QL DI D D +
Sbjct: 17 NISLRTLFPPIFTFLKYILYAGDDDGTIPIPRSNLNGQLDDI-ADRADGSD 66
>02_02_0612 - 12142192-12143253
Length = 353
Score = 28.3 bits (60), Expect = 3.1
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Frame = +3
Query: 186 FVDSIDIEEHDVLDNPTIRKIFPDISVLK----KEITHFFDNDDIXPPASLNSQLGDINI 353
F+ D+E L N + I D++V+K KE T + PP+ L+ LGD+ +
Sbjct: 124 FMKKTDLERSVHLSNDSF-SIMCDLTVMKDICSKETTQ--KQFVVVPPSDLHQHLGDLLL 180
Query: 354 DECDSENDVKENILQ 398
DS DV N+ Q
Sbjct: 181 KNMDS-TDVTFNVGQ 194
>04_04_0881 + 29055724-29059197
Length = 1157
Score = 27.9 bits (59), Expect = 4.2
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +3
Query: 183 DFVDSIDIEEHDVLDNPTIRKIFPDISVLKKEITHFFDNDDIXP--PASLNSQLGDINID 356
DF ++EE D+ N RKI P+IS +T D++ + PASL S L +
Sbjct: 628 DFARLGELEELDLSHNQLSRKIPPEISNCSSLVTLKLDDNHLGGEIPASL-SNLSKLQTL 686
Query: 357 ECDSEN 374
+ S N
Sbjct: 687 DLSSNN 692
>10_08_0299 -
16607152-16607322,16607465-16607785,16607870-16608121,
16608298-16608435,16608544-16608651,16608814-16609014,
16609109-16609233,16609252-16609321,16609919-16610455
Length = 640
Score = 27.5 bits (58), Expect = 5.5
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Frame = -3
Query: 283 VISFFKTDISGNIFLIVGLSRTSCSSISMLSTKSSAIFTLHEVRSIIFS------TFVTQ 122
V+S D +G+ L T C + + S + F H+VRS+ +S VT
Sbjct: 180 VVSALAVDHTGSRVLSGSYDYTVCMNSKLQSFRQLEPFEGHQVRSLSWSPTSDRFLCVTG 239
Query: 121 GSQMEMYKNKLLTI*DFI 68
+Q ++Y LT+ +FI
Sbjct: 240 SAQAKIYDRDGLTLGEFI 257
>08_01_0648 +
5602454-5602513,5602913-5603000,5603128-5604248,
5605146-5605217,5605218-5605373,5605458-5605748
Length = 595
Score = 26.6 bits (56), Expect = 9.6
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +3
Query: 285 HFFDNDDIXPPASLNSQLGDINIDECDSENDVKENILQSNHSDLIDSCN 431
HF D D S D + D+ D E+D E++ S +SD DSC+
Sbjct: 332 HFDDKRDNESDQDNGSSDEDSD-DKRDQESDHDEDVPSSPYSDSKDSCD 379
>05_07_0083 +
27580710-27580767,27580869-27580924,27581024-27581133,
27582083-27582148,27582149-27582278,27582636-27582737,
27582969-27583010,27583153-27583194,27583356-27583432,
27583730-27583856,27583953-27584120,27584359-27584484,
27584575-27584685,27584776-27584910,27585540-27585614,
27585827-27585934,27586015-27586101,27586187-27586273,
27586762-27586830
Length = 591
Score = 26.6 bits (56), Expect = 9.6
Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +3
Query: 141 KIILRTSCKVKMAEDFVDS-IDIEEHDVLDNPTIRKIFPDISVLKKEIT 284
KI+L T V M ++ ++ ++E +V+ + + I+PD+S K E++
Sbjct: 264 KIVLNTM--VTMFSEYCENKFEVEPVEVVSHDGSKTIYPDLSCYKMEVS 310
>03_05_0937 -
28967038-28967245,28967348-28967556,28967584-28967644,
28967926-28968742,28968960-28971024
Length = 1119
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = +3
Query: 297 NDDIXPP--ASLNSQLGDINID 356
NDDI P ASL++Q+GD+ +D
Sbjct: 591 NDDIKPTRAASLDNQVGDLKLD 612
>02_04_0367 +
22399785-22399899,22400911-22401102,22401990-22402117,
22402229-22402384,22402948-22403206,22403762-22403836,
22404288-22404610,22405041-22405274,22405355-22405542,
22405734-22405869,22405963-22406071,22406988-22407090,
22407188-22407374,22407467-22407565,22407666-22407724,
22408581-22408686,22408798-22408962
Length = 877
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = -3
Query: 283 VISFFKTDISGNIFLIVGLSRTSCSSISMLSTKSSAIF 170
V+SFF + FLI+G+ +SC +I + ++ + A++
Sbjct: 495 VMSFFDRKLYTWCFLILGILASSCVAIFIQASSALAVY 532
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,834,281
Number of Sequences: 37544
Number of extensions: 181129
Number of successful extensions: 489
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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