Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27m06
         (459 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-2182|AAF49887.2| 3892|Drosophila melanogaster CG32113-P...    29   2.3  
U13397-1|AAA62666.1|  437|Drosophila melanogaster DTIS11 protein...    27   9.2  
AE014298-1800|AAF48194.2|  436|Drosophila melanogaster CG4070-PA...    27   9.2  

>AE014296-2182|AAF49887.2| 3892|Drosophila melanogaster CG32113-PA
            protein.
          Length = 3892

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +3

Query: 258  ISVLKKEITHFFDNDDIXPPASLNSQLGDINIDECDSENDVKENILQSNHS 410
            +  L K +TH   N       +L+  LG + +D+ D+E   +   LQSN S
Sbjct: 3604 VKSLVKNVTHGISNSTAKLTETLSDSLGKVVLDDHDNETRQRILELQSNTS 3654


>U13397-1|AAA62666.1|  437|Drosophila melanogaster DTIS11 protein
           protein.
          Length = 437

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 270 KKEITHFFDNDDIXPPASLNSQLGDINIDECDSE 371
           +++ +H+F+  DI    ++N  LGD + +E   E
Sbjct: 11  EQDDSHYFERGDISKYVTMNDHLGDFDCNEVRKE 44


>AE014298-1800|AAF48194.2|  436|Drosophila melanogaster CG4070-PA,
           isoform A protein.
          Length = 436

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 270 KKEITHFFDNDDIXPPASLNSQLGDINIDECDSE 371
           +++ +H+F+  DI    ++N  LGD + +E   E
Sbjct: 11  EQDDSHYFERGDISKYVTMNDHLGDFDCNEVRKE 44


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,478,272
Number of Sequences: 53049
Number of extensions: 344628
Number of successful extensions: 954
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1518217281
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)