Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27m06
         (459 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-6|CAA90253.1|  341|Caenorhabditis elegans Hypothetical pr...    31   0.40 
U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical pr...    29   1.6  
U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z81546-6|CAB04457.1|  425|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z74475-3|CAA98957.2|  567|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z83128-6|CAB05638.2|  353|Caenorhabditis elegans Hypothetical pr...    27   6.6  
U97015-6|AAB52345.2| 1064|Caenorhabditis elegans Hypothetical pr...    27   6.6  
AF039720-11|AAK68359.1|  260|Caenorhabditis elegans Hypothetical...    27   6.6  
AL033514-31|CAA22092.1|  444|Caenorhabditis elegans Hypothetical...    27   8.7  

>Z49967-6|CAA90253.1|  341|Caenorhabditis elegans Hypothetical
           protein F54C9.7 protein.
          Length = 341

 Score = 31.1 bits (67), Expect = 0.40
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 342 DINIDECDSENDVKENILQSNHSDLIDSCNFNAN 443
           D+N    +++ND+ + +  SN+SD+I  C +  N
Sbjct: 24  DLNGVIVENDNDICDGMCHSNYSDIIKECQYGCN 57


>U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical
           protein B0496.3a protein.
          Length = 1551

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 174 MAEDFVDSIDI-EEHDVLDNPTIRKIFPDISVLKKEITHFFDNDDIXPP 317
           + +D  D  D+  E   L + T RKI  D  + +KE   F DN  + PP
Sbjct: 357 IVQDLADEQDVFMEFGHLSSETRRKI-EDFRIRRKEAEEFNDNSPVKPP 404


>U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical
           protein B0496.3b protein.
          Length = 1592

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 174 MAEDFVDSIDI-EEHDVLDNPTIRKIFPDISVLKKEITHFFDNDDIXPP 317
           + +D  D  D+  E   L + T RKI  D  + +KE   F DN  + PP
Sbjct: 357 IVQDLADEQDVFMEFGHLSSETRRKI-EDFRIRRKEAEEFNDNSPVKPP 404


>Z81546-6|CAB04457.1|  425|Caenorhabditis elegans Hypothetical
           protein F53A2.9 protein.
          Length = 425

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = -2

Query: 227 IQNIMFLDINAIDKIFSHFYLT*G---T*YNFQYLRYTRKSNGNVQK*IIN 84
           I ++ FLD+  +D+IF H  +T G     +N     +TRK+   V   +IN
Sbjct: 229 IIDVEFLDVGKLDQIFHHSLMTTGKVNLTFNRVSTHFTRKTLNFVNSPMIN 279


>Z74475-3|CAA98957.2|  567|Caenorhabditis elegans Hypothetical
           protein R04F11.4 protein.
          Length = 567

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 327 STKRVVXYRHYQKNVLFLFSKQIYPE 250
           ST R +  R Y + +LF + KQ+ PE
Sbjct: 534 STARTLTPREYYQKILFQYCKQLQPE 559


>Z83128-6|CAB05638.2|  353|Caenorhabditis elegans Hypothetical
           protein W01D2.4 protein.
          Length = 353

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 279 FLFSKQIYPEIFFLLLDY 226
           FLF K ++P + FLLL Y
Sbjct: 146 FLFRKSVFPVVAFLLLSY 163


>U97015-6|AAB52345.2| 1064|Caenorhabditis elegans Hypothetical
           protein F48C1.1 protein.
          Length = 1064

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 357 ECDSENDVKENILQSNHSDLIDSCNFNANV 446
           +   E+DV   IL   H D+++SC  +A+V
Sbjct: 307 DATGEDDVLTQILPYTHYDILNSCGSDASV 336


>AF039720-11|AAK68359.1|  260|Caenorhabditis elegans Hypothetical
           protein F33D11.12 protein.
          Length = 260

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -3

Query: 241 LIVGLSRTSCSSISMLSTKSSAIFTLHEVRSIIFSTF--VTQGSQMEMYKNKLLTI*DFI 68
           L VG     CSS++  +T    IF L E  SI+F+ F  V  G+Q+    N   TI    
Sbjct: 153 LCVGAEWQQCSSLTPPATTLLLIFLLFE--SILFAIFTSVMFGTQISSICNDETTIESMR 210

Query: 67  SESIN 53
           S + N
Sbjct: 211 SRNAN 215


>AL033514-31|CAA22092.1|  444|Caenorhabditis elegans Hypothetical
           protein Y75B8A.32 protein.
          Length = 444

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 231 PTIRKIFPDISVLKKEITHFFDNDDIXPPASLNSQLGDINI 353
           PTI   +P I  +  E   FF+++DI    S++  +    I
Sbjct: 133 PTIEDYYPPIQTINSEGHEFFNDNDIENTRSVSIPISQTEI 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,512,936
Number of Sequences: 27780
Number of extensions: 197224
Number of successful extensions: 575
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)