Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27m05
         (452 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans...   131   6e-32
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...   127   7e-31
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...   122   2e-29
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...   103   1e-23
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr...    93   2e-20
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr...    91   7e-20
SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i...    84   8e-18
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    74   9e-15
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans...    71   8e-14
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    27   1.0  
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    25   4.1  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    25   7.2  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    25   7.2  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    24   9.5  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    24   9.5  

>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score =  131 bits (316), Expect = 6e-32
 Identities = 61/122 (50%), Positives = 75/122 (61%)
 Frame = +3

Query: 87  VTLHTDVGDIKIELYCEQCPKACENFLALCASDYYNGCLFHRNIKGFIVQXXXXXXXXXX 266
           V L T +G I IELY E  PK C+NF  L    YY+G +FHR I  F++Q          
Sbjct: 4   VELQTSLGKILIELYTEHAPKTCQNFYTLAKEGYYDGVIFHRVIPDFVIQGGDPTGTGRG 63

Query: 267 XXSIWGRKFEDEIKDELKHNARGVVSMANNGPNTNGSQFFITYGEQPHLDLKYTIYGRVI 446
             SI+G KF+DEI  +L H   G++SMAN GPNTN SQFFIT    P LD K+TI+GRV+
Sbjct: 64  GTSIYGDKFDDEIHSDLHHTGAGILSMANAGPNTNSSQFFITLAPTPWLDGKHTIFGRVV 123

Query: 447 DG 452
            G
Sbjct: 124 SG 125


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score =  127 bits (307), Expect = 7e-31
 Identities = 58/118 (49%), Positives = 75/118 (63%)
 Frame = +3

Query: 99  TDVGDIKIELYCEQCPKACENFLALCASDYYNGCLFHRNIKGFIVQXXXXXXXXXXXXSI 278
           T+ G+I IEL+ +  P A  NF+ L    YY   +FHRNI  F++Q            SI
Sbjct: 282 TNHGEINIELHTDYAPHAVYNFVQLAKQGYYRNTIFHRNIARFMIQGGDPSGTGRGGQSI 341

Query: 279 WGRKFEDEIKDELKHNARGVVSMANNGPNTNGSQFFITYGEQPHLDLKYTIYGRVIDG 452
           WG+ F+DE  + LKH+ RG++SMAN G NTNGSQFFI YG   HLD K+TI+GRV+ G
Sbjct: 342 WGKPFKDEFCNPLKHDDRGIISMANRGKNTNGSQFFILYGPAKHLDNKHTIFGRVVGG 399


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score =  122 bits (295), Expect = 2e-29
 Identities = 60/123 (48%), Positives = 74/123 (60%)
 Frame = +3

Query: 84  AVTLHTDVGDIKIELYCEQCPKACENFLALCASDYYNGCLFHRNIKGFIVQXXXXXXXXX 263
           A  +HT  GDI I+LY E+ PKA +NF     + YY+  +FHR IK F++Q         
Sbjct: 456 AAIIHTTQGDISIKLYPEEAPKAVQNFTTHAENGYYDNTIFHRIIKNFMIQGGDPLGDGT 515

Query: 264 XXXSIWGRKFEDEIKDELKHNARGVVSMANNGPNTNGSQFFITYGEQPHLDLKYTIYGRV 443
              SIW + FEDEI   LKH+    VSMAN+GPNTNGSQFFIT    P LD K+TI+ R 
Sbjct: 516 GGESIWKKDFEDEISPNLKHDRPFTVSMANSGPNTNGSQFFITTDLTPWLDGKHTIFARA 575

Query: 444 IDG 452
             G
Sbjct: 576 YAG 578


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score =  103 bits (248), Expect = 1e-23
 Identities = 52/125 (41%), Positives = 69/125 (55%)
 Frame = +3

Query: 72  LETMAVTLHTDVGDIKIELYCEQCPKACENFLALCASDYYNGCLFHRNIKGFIVQXXXXX 251
           L T  V L T  GDI+IEL+C++ PKAC NF+ LC   YY+G + HR +  F++Q     
Sbjct: 10  LATGTVILKTTRGDIQIELWCKEVPKACRNFIQLCLEGYYDGTIVHRVVPEFLIQGGDPT 69

Query: 252 XXXXXXXSIWGRKFEDEIKDELKHNARGVVSMANNGPNTNGSQFFITYGEQPHLDLKYTI 431
                  SI+G  F  E    L+   RG+V MA      N SQFFIT G  P  + K T+
Sbjct: 70  GTGMGGESIYGEPFAVETHPRLRFIRRGLVGMACTENEGNNSQFFITLGPTPEWNGKQTL 129

Query: 432 YGRVI 446
           +GRV+
Sbjct: 130 FGRVV 134


>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 93.1 bits (221), Expect = 2e-20
 Identities = 56/121 (46%), Positives = 69/121 (57%), Gaps = 8/121 (6%)
 Frame = +3

Query: 114 IKIELYCEQCPKACENFLALC---ASD----YYNGCLFHRNIKGFIVQXXXXXXXXXXXX 272
           I  EL+    PK  +NF +LC     D     Y G  FHR IK F++Q            
Sbjct: 19  IYFELFDNVVPKTVKNFASLCNGFEKDGRCLTYKGSRFHRVIKNFMLQGGDFTRGNGTGG 78

Query: 273 -SIWGRKFEDEIKDELKHNARGVVSMANNGPNTNGSQFFITYGEQPHLDLKYTIYGRVID 449
            SI+G KFEDE   ELKH+   ++SMAN GPNTNGSQFFIT    PHLD K+ ++G+VI 
Sbjct: 79  ESIYGEKFEDE-NFELKHDKPFLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGKVIQ 137

Query: 450 G 452
           G
Sbjct: 138 G 138


>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 91.1 bits (216), Expect = 7e-20
 Identities = 53/120 (44%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
 Frame = +3

Query: 105 VGDIKIELYCEQCPKACENFLALCASDY---YNGCLFHRNIKGFIVQXXXXXXXXXXXX- 272
           +G I  +L+ +  PK   NF ALC  +    Y G  FHR I  F++Q             
Sbjct: 15  LGRIVFKLFDDVVPKTAANFRALCTGEKGYGYAGSTFHRVIPQFMLQGGDFTRGNGTGGK 74

Query: 273 SIWGRKFEDEIKDELKHNARGVVSMANNGPNTNGSQFFITYGEQPHLDLKYTIYGRVIDG 452
           SI+G KF DE    LKHN  G++SMAN GPNTNGSQFFIT    P LD K+ ++G V +G
Sbjct: 75  SIYGEKFPDE-NFALKHNKPGLLSMANAGPNTNGSQFFITTVVTPWLDGKHVVFGEVTEG 133


>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 201

 Score = 84.2 bits (199), Expect = 8e-18
 Identities = 47/120 (39%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
 Frame = +3

Query: 105 VGDIKIELYCEQCPKACENFLALCASDY---YNGCLFHRNIKGFIVQXXXXXXXXXXXX- 272
           +G + I L+ +  PK  ENF AL   +    Y G +FHR I  F++Q             
Sbjct: 40  LGRVTIGLFGKTVPKTAENFRALATGEKGFGYEGSIFHRVIPNFMIQGGDITKGDGTGGK 99

Query: 273 SIWGRKFEDEIKDELKHNARGVVSMANNGPNTNGSQFFITYGEQPHLDLKYTIYGRVIDG 452
           SI+G +F DE   +L H   G++SMAN GP++NGSQFFIT  + P LD  + ++G V+ G
Sbjct: 100 SIYGSRFPDE-NFKLSHQRPGLLSMANAGPDSNGSQFFITTVKTPWLDGHHVVFGEVLSG 158


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 74.1 bits (174), Expect = 9e-15
 Identities = 48/139 (34%), Positives = 67/139 (48%), Gaps = 15/139 (10%)
 Frame = +3

Query: 81  MAVTLHTDVGDIKIELYCEQCPKACENFLALCASDYYNGCLFHRNIKGFIVQ-XXXXXXX 257
           M+V + T VGD+ I+L+ ++ PK CENFL LC   YYN C F+     +  Q        
Sbjct: 1   MSVLIETTVGDLVIDLFVKEAPKTCENFLKLCKLKYYNFCPFYNIQHNYTCQTGDPLGPT 60

Query: 258 XXXXXSIWG------RKFEDEIKDELKHNARGVVSMANNGPNTN-------GSQFFITYG 398
                 +W       R F+ E    L HN  G+VSM+    ++        GSQF IT  
Sbjct: 61  GDGGRCVWNVLNKGTRFFKAEFNPSLVHNKMGLVSMSTATISSRDDKLLVCGSQFIITLS 120

Query: 399 EQ-PHLDLKYTIYGRVIDG 452
           +    LD +Y IYG+V +G
Sbjct: 121 DNLEGLDERYPIYGQVAEG 139


>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 70.9 bits (166), Expect = 8e-14
 Identities = 46/127 (36%), Positives = 62/127 (48%), Gaps = 11/127 (8%)
 Frame = +3

Query: 105 VGDIKIELYCEQCPKACENFLALCASDY---------YNGCLFHRNIKGFIVQXXXXXXX 257
           +G IKI L+    PK  ENF   C  +          Y    FHR I+GF++Q       
Sbjct: 18  LGRIKIRLFSSIVPKTAENFRQFCTGETLGVNQKPIGYKNSTFHRIIQGFMIQGGDFVSG 77

Query: 258 XXXXXSIW--GRKFEDEIKDELKHNARGVVSMANNGPNTNGSQFFITYGEQPHLDLKYTI 431
                +     R F DE    LKH+  G++SMAN G ++NG QFFIT      LD K+ +
Sbjct: 78  DGTGSATIFNSRTFPDE-NFTLKHDRPGLLSMANAGKDSNGCQFFITTVPCDFLDGKHVV 136

Query: 432 YGRVIDG 452
           +G VI+G
Sbjct: 137 FGEVIEG 143


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 112  ISRLNYIASNVRKRVRIF*LYVQV 183
            +SR+NY+AS   K+VR+  L   V
Sbjct: 1278 VSRMNYVASQTNKKVRVLGLSTAV 1301


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = +2

Query: 356 WAKHEWKPIFHYVWRTTSSRFKIYHLWK 439
           +   ++  IF+++WR     F + H W+
Sbjct: 603 YCSRQYLKIFNFLWRLKRIEFALAHSWR 630


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 305 NFIFKFSSPNRRTAFPSSRGITSLYYKSL 219
           N +F+  SP+ R +FPS   ++ L+  S+
Sbjct: 158 NNVFEAISPHERESFPSEPQVSVLFTSSV 186


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 84  PLFPDYNLLIQFYIINILFRYCY 16
           PLF ++N L+Q    N+ +R C+
Sbjct: 128 PLFDNWNRLLQLDSSNLEYRLCF 150


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 348 ANNGPNTNGSQFFITYGEQPHLD 416
           A+  P+TN S   I++ EQ H D
Sbjct: 68  ADTSPSTNASNTNISFPEQEHKD 90


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 324 NARGVVSMANNGPNTNGSQFFITYG 398
           N  GV + +NN P+TN S    ++G
Sbjct: 903 NNSGVKASSNNNPSTNSSTAPFSFG 927


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,904,850
Number of Sequences: 5004
Number of extensions: 36474
Number of successful extensions: 112
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)