Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27l22
         (469 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY094806-1|AAM11159.1|  325|Drosophila melanogaster LD27256p pro...    29   4.1  
AE013599-746|AAF59020.1|  325|Drosophila melanogaster CG8237-PA ...    29   4.1  
X05138-1|CAA28784.1|  376|Drosophila melanogaster even skipped p...    27   9.6  
M14767-1|AAA28522.1|  376|Drosophila melanogaster protein ( D.me...    27   9.6  
AY069224-1|AAL39369.2| 1892|Drosophila melanogaster GH27092p pro...    27   9.6  
AE013599-1419|AAF58554.1| 1890|Drosophila melanogaster CG8858-PA...    27   9.6  
AE013599-983|AAF58865.1|  376|Drosophila melanogaster CG2328-PA ...    27   9.6  

>AY094806-1|AAM11159.1|  325|Drosophila melanogaster LD27256p
           protein.
          Length = 325

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/61 (27%), Positives = 34/61 (55%)
 Frame = -3

Query: 275 LDIFLPFFTTASHVRIVLFCKLLNIINVSVLRESISSTTLEKCFSIDSYMTTSIDFISCS 96
           +D+F+ F      V+I++   ++N+ N+    E +   TL++     ++  TS+DFIS S
Sbjct: 133 IDMFILFI-----VKIIITFGVVNLFNIE-FDEDVIRRTLDQEDLFSNFFDTSLDFISMS 186

Query: 95  S 93
           +
Sbjct: 187 T 187


>AE013599-746|AAF59020.1|  325|Drosophila melanogaster CG8237-PA
           protein.
          Length = 325

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/61 (27%), Positives = 34/61 (55%)
 Frame = -3

Query: 275 LDIFLPFFTTASHVRIVLFCKLLNIINVSVLRESISSTTLEKCFSIDSYMTTSIDFISCS 96
           +D+F+ F      V+I++   ++N+ N+    E +   TL++     ++  TS+DFIS S
Sbjct: 133 IDMFILFI-----VKIIITFGVVNLFNIE-FDEDVIRRTLDQEDLFSNFFDTSLDFISMS 186

Query: 95  S 93
           +
Sbjct: 187 T 187


>X05138-1|CAA28784.1|  376|Drosophila melanogaster even skipped
           protein.
          Length = 376

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 115 LILFLVARYSSVPRTPNNPPNKC*TWPKSSLSKS 14
           L++ L+A     P+TP   PN+C + P +SL+ S
Sbjct: 26  LVVDLLATQYGKPQTPPPSPNECLSSPDNSLNGS 59


>M14767-1|AAA28522.1|  376|Drosophila melanogaster protein (
           D.melanogaster even-skipped (eve) gene containing homeo
           box. ).
          Length = 376

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 115 LILFLVARYSSVPRTPNNPPNKC*TWPKSSLSKS 14
           L++ L+A     P+TP   PN+C + P +SL+ S
Sbjct: 26  LVVDLLATQYGKPQTPPPSPNECLSSPDNSLNGS 59


>AY069224-1|AAL39369.2| 1892|Drosophila melanogaster GH27092p protein.
          Length = 1892

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/56 (21%), Positives = 27/56 (48%)
 Frame = +1

Query: 106  IKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAVVKNGKKIS 273
            +K++     + ME +   ++  +   K D       +QN+ I  WD +V + K+++
Sbjct: 1107 LKTLSAESRQKMEPYLGKIIPRLYRYKYDP---TPKIQNSMISIWDTIVTDSKEVT 1159


>AE013599-1419|AAF58554.1| 1890|Drosophila melanogaster CG8858-PA
            protein.
          Length = 1890

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/56 (21%), Positives = 27/56 (48%)
 Frame = +1

Query: 106  IKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAVVKNGKKIS 273
            +K++     + ME +   ++  +   K D       +QN+ I  WD +V + K+++
Sbjct: 1105 LKTLSAESRQKMEPYLGKIIPRLYRYKYDP---TPKIQNSMISIWDTIVTDSKEVT 1157


>AE013599-983|AAF58865.1|  376|Drosophila melanogaster CG2328-PA
           protein.
          Length = 376

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 115 LILFLVARYSSVPRTPNNPPNKC*TWPKSSLSKS 14
           L++ L+A     P+TP   PN+C + P +SL+ S
Sbjct: 26  LVVDLLATQYGKPQTPPPSPNECLSSPDNSLNGS 59


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,542,163
Number of Sequences: 53049
Number of extensions: 326843
Number of successful extensions: 903
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1580609772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)