Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27l19
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.6  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   3.4  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   6.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.0  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   6.0  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 574 HEPSYFEVFITKSNWDRRNPNNLER 648
           H   Y  V I  S++DR N  NLER
Sbjct: 232 HSKEYL-VSIMFSHYDRNNNGNLER 255


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = +1

Query: 577 EPSYFEVFITKSNWDRRNPNNLERI 651
           EP Y+ + + K NW ++    +  I
Sbjct: 209 EPIYYNLTMVKLNWPKKRVTKMSSI 233


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/20 (45%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
 Frame = +1

Query: 484 PLNN-WKPDTLYLNLYXPVY 540
           P N  W+PDT+  N   P Y
Sbjct: 83  PYNRVWRPDTILYNNADPQY 102


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = -1

Query: 491 FKGSSIPLLSPNTELRSFEPAPQSVCGTTLC 399
           +KG ++ ++S  T+ + + P P ++ G   C
Sbjct: 92  YKGRALVVVSCVTKDQPYRPHPHNLVGKEAC 122


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = -1

Query: 491 FKGSSIPLLSPNTELRSFEPAPQSVCGTTLC 399
           +KG ++ ++S  T+ + + P P ++ G   C
Sbjct: 92  YKGRALVVVSCVTKDQPYRPHPHNLVGKEAC 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,830
Number of Sequences: 438
Number of extensions: 4250
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)