Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27l17
         (412 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   167   8e-43
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   166   1e-42
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    26   2.0  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   2.0  
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    26   2.0  
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    25   6.1  
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    24   8.0  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    24   8.0  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  167 bits (405), Expect = 8e-43
 Identities = 77/106 (72%), Positives = 87/106 (82%)
 Frame = +2

Query: 95  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 274
           ++ ARP VS+YS K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 275 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPT 412
           HQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPT
Sbjct: 60  HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPT 105


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  166 bits (403), Expect = 1e-42
 Identities = 76/106 (71%), Positives = 87/106 (82%)
 Frame = +2

Query: 95  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 274
           ++ ARP VS+Y+ K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 275 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPT 412
           HQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPT
Sbjct: 60  HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPT 105


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 94  SIGSPTFSVGVFRKERDGAGCSQAPPVRVQGAHTSGP 204
           SI SP+ SVG   +  D +  S + P+ + G  +  P
Sbjct: 312 SITSPSSSVGQIPQPTDHSALSPSKPMSISGTESPNP 348


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 156 APCTVSLFSEYTDTKGRATDRLISLL 79
           A C V ++SEYT   G ++  L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +1

Query: 169 PVRVQGAHTSGPGQ*CSRFYVQELEAALLREQ 264
           PV VQG HT G      +F  Q L A +L  Q
Sbjct: 29  PVDVQGCHTLGERNDPKKFRFQTLVALMLSSQ 60


>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 16  VAWRMVFITAISVYFGGIA-SLK*RNESIGSPTFSVGVF 129
           V W +VF+    ++ GG+A  LK   +S+    F V  F
Sbjct: 343 VGWGLVFVLICVIWGGGLAFQLKYTRKSVAESDFVVTDF 381


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 11/47 (23%), Positives = 20/47 (42%)
 Frame = +2

Query: 146 VQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTS 286
           +QG+  P  F  +    P+ +   H   ++    PY   K+  H+ S
Sbjct: 709 LQGSDGPRKFTIEKAGEPNKLPKAHTCFNRLDLPPYTSKKDLDHKLS 755


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 356 TYEYHHHGHAEFGRQH 309
           T++Y HH H   G  H
Sbjct: 19  THDYDHHNHDHHGHDH 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,715,438
Number of Sequences: 5004
Number of extensions: 33546
Number of successful extensions: 91
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)