Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27l17
(412 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 147 3e-36
U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z69302-6|CAL36504.1| 472|Caenorhabditis elegans Hypothetical pr... 28 2.3
Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr... 28 2.3
AC024813-3|AAK27881.1| 461|Caenorhabditis elegans Est (ever sho... 27 4.0
AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever sho... 27 4.0
AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever sho... 27 4.0
AL132949-31|CAB61110.3| 297|Caenorhabditis elegans Hypothetical... 27 5.3
Z99288-7|CAB63421.1| 362|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z81086-9|CAD30440.1| 75|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z70718-11|CAA94680.1| 590|Caenorhabditis elegans Hypothetical p... 27 7.0
Z68301-10|CAA92629.1| 590|Caenorhabditis elegans Hypothetical p... 27 7.0
U58748-10|AAB52970.2| 701|Caenorhabditis elegans Hypothetical p... 27 7.0
AF067624-4|AAM15592.1| 644|Caenorhabditis elegans Hypothetical ... 27 7.0
AF067624-2|AAC17562.3| 634|Caenorhabditis elegans Hypothetical ... 27 7.0
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 26 9.2
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 147 bits (356), Expect = 3e-36
Identities = 70/102 (68%), Positives = 80/102 (78%)
Frame = +2
Query: 104 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 283
ARPLV+VY EK E Q + LP VF+ PIRPDLV+ + + +N RQ + V+ +AG Q
Sbjct: 3 ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQH 61
Query: 284 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAP 409
SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP
Sbjct: 62 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAP 103
>U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical
protein F53A9.9 protein.
Length = 147
Score = 28.7 bits (61), Expect = 1.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 392 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 309
HHD +++H + ++ HHHGH G H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145
>Z69302-6|CAL36504.1| 472|Caenorhabditis elegans Hypothetical
protein F40F8.11 protein.
Length = 472
Score = 28.3 bits (60), Expect = 2.3
Identities = 20/57 (35%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Frame = +2
Query: 236 NSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR---SGQGAFGNMCRGGR 397
N R V K H+ SW T + R GGG R SG G RGGR
Sbjct: 137 NKRGTKGVQKMPNHRLEGNSWETNGLQNQTARGGGGGRGRGRGSGGRGRGGFNRGGR 193
>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical
protein K03H1.5 protein.
Length = 1385
Score = 28.3 bits (60), Expect = 2.3
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +1
Query: 301 YRTCCRPNSACPWWWYS*VRSGC--LR*HVSWWTYVRPH 411
YRTCC+ C ++++ + +GC R + + Y PH
Sbjct: 823 YRTCCKYADHCEFYYWRRMTNGCQDYRAPAAGYIYGEPH 861
>AC024813-3|AAK27881.1| 461|Caenorhabditis elegans Est (ever
shorter telomeres) homologprotein 1, isoform b protein.
Length = 461
Score = 27.5 bits (58), Expect = 4.0
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
Frame = +2
Query: 107 RPLVSVYSEKSETVQGAAKPLPFVFKA--PIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 280
RP + +Y G+ K L + P RP+ +N +MS NSR+ + +
Sbjct: 19 RPEIQIYRPGMLRQGGSTKSLSSTNEEARPPRPEKLNTTTTTMSGNSRRRSNDTDSVTSR 78
Query: 281 TSAESWGTGRAVARIPRVRGGGTHRSGQG 367
+ S V RGGG +R +G
Sbjct: 79 GGSGSTTPDANVINAMNERGGGRNRFEKG 107
>AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever
shorter telomeres) homologprotein 1, isoform c protein.
Length = 1027
Score = 27.5 bits (58), Expect = 4.0
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
Frame = +2
Query: 107 RPLVSVYSEKSETVQGAAKPLPFVFKA--PIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 280
RP + +Y G+ K L + P RP+ +N +MS NSR+ + +
Sbjct: 19 RPEIQIYRPGMLRQGGSTKSLSSTNEEARPPRPEKLNTTTTTMSGNSRRRSNDTDSVTSR 78
Query: 281 TSAESWGTGRAVARIPRVRGGGTHRSGQG 367
+ S V RGGG +R +G
Sbjct: 79 GGSGSTTPDANVINAMNERGGGRNRFEKG 107
>AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever
shorter telomeres) homologprotein 1, isoform a protein.
Length = 1241
Score = 27.5 bits (58), Expect = 4.0
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
Frame = +2
Query: 107 RPLVSVYSEKSETVQGAAKPLPFVFKA--PIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 280
RP + +Y G+ K L + P RP+ +N +MS NSR+ + +
Sbjct: 19 RPEIQIYRPGMLRQGGSTKSLSSTNEEARPPRPEKLNTTTTTMSGNSRRRSNDTDSVTSR 78
Query: 281 TSAESWGTGRAVARIPRVRGGGTHRSGQG 367
+ S V RGGG +R +G
Sbjct: 79 GGSGSTTPDANVINAMNERGGGRNRFEKG 107
>AL132949-31|CAB61110.3| 297|Caenorhabditis elegans Hypothetical
protein Y53F4B.36 protein.
Length = 297
Score = 27.1 bits (57), Expect = 5.3
Identities = 12/58 (20%), Positives = 25/58 (43%)
Frame = +2
Query: 89 MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 262
MS++V P +S V + + F++ P ++ D H+ + + CV+
Sbjct: 182 MSMAVTSPYLSKLDRLPIVVSACKRAMCFIYDRPTNSIILLDTHMHFKRRAVSVLCVA 239
>Z99288-7|CAB63421.1| 362|Caenorhabditis elegans Hypothetical
protein ZK262.8 protein.
Length = 362
Score = 26.6 bits (56), Expect = 7.0
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = -3
Query: 377 YR-RHPDRTYEYHHHGHAEFGRQHVRYPMIRHWF 279
YR + PD HH F QH R+P IR F
Sbjct: 38 YRTKQPDNRKRALHHPRLRFRCQHPRFPPIRVLF 71
>Z81086-9|CAD30440.1| 75|Caenorhabditis elegans Hypothetical
protein F53B6.9 protein.
Length = 75
Score = 26.6 bits (56), Expect = 7.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -3
Query: 401 TYVHHDTCYRRHPDRTYEYHHHGHAEF 321
TY HH Y ++E+HHH H +
Sbjct: 20 TYAHHSHSY----SHSHEHHHHHHGGY 42
>Z70718-11|CAA94680.1| 590|Caenorhabditis elegans Hypothetical
protein W01B6.9 protein.
Length = 590
Score = 26.6 bits (56), Expect = 7.0
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -2
Query: 195 RMGALNTNGRGLAAPCTVSLFSEYT-DTKGRATDRLISL 82
+ G LN NGR A F++YT T R TD SL
Sbjct: 7 KTGGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSL 45
>Z68301-10|CAA92629.1| 590|Caenorhabditis elegans Hypothetical
protein W01B6.9 protein.
Length = 590
Score = 26.6 bits (56), Expect = 7.0
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -2
Query: 195 RMGALNTNGRGLAAPCTVSLFSEYT-DTKGRATDRLISL 82
+ G LN NGR A F++YT T R TD SL
Sbjct: 7 KTGGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSL 45
>U58748-10|AAB52970.2| 701|Caenorhabditis elegans Hypothetical
protein ZK180.6 protein.
Length = 701
Score = 26.6 bits (56), Expect = 7.0
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +2
Query: 323 IPRVRGGGTHRSGQGAFGNMCRGG 394
+P GGG S Q A GN C GG
Sbjct: 26 LPGAGGGGCCSSAQPACGNPCGGG 49
>AF067624-4|AAM15592.1| 644|Caenorhabditis elegans Hypothetical
protein M01B12.4b protein.
Length = 644
Score = 26.6 bits (56), Expect = 7.0
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -2
Query: 204 RSGRMGALNTNGRGLAAPCTVSLFSEYTDTK--GRATDRL 91
R R+ A+ RG+A+P T +L D K GRA D L
Sbjct: 568 RKSRLAAILAKSRGMASPMTNTLPPTADDIKESGRANDVL 607
>AF067624-2|AAC17562.3| 634|Caenorhabditis elegans Hypothetical
protein M01B12.4a protein.
Length = 634
Score = 26.6 bits (56), Expect = 7.0
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -2
Query: 204 RSGRMGALNTNGRGLAAPCTVSLFSEYTDTK--GRATDRL 91
R R+ A+ RG+A+P T +L D K GRA D L
Sbjct: 558 RKSRLAAILAKSRGMASPMTNTLPPTADDIKESGRANDVL 597
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 26.2 bits (55), Expect = 9.2
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -3
Query: 392 HHDTCYRRHPDRTYEYHHHGH 330
HH + H D+ +HHHGH
Sbjct: 698 HHGAHHGHHDDKE-NHHHHGH 717
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,837,587
Number of Sequences: 27780
Number of extensions: 212750
Number of successful extensions: 678
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -