Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27l13
         (187 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    24   2.3  
SPBC8D2.15 |||mitochondrial lipoic acid synthetase |Schizosaccha...    23   4.0  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    23   4.0  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    23   7.0  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    23   7.0  
SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyce...    23   7.0  

>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -3

Query: 176 LSEGSLNNDFNNMIYVFLFEV*NIYSFQYDATTVFKFHKSQ*NKQII 36
           L++  L+ D N    + +F+V      Q D  T+  + KS+  KQI+
Sbjct: 78  LADNILSTDENRKEDIAVFDVPLPNGLQIDTFTLCLYRKSKWKKQIV 124


>SPBC8D2.15 |||mitochondrial lipoic acid synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 149 NHCLKTLQKVKKK 187
           NH  KT+QK+K+K
Sbjct: 185 NHIAKTIQKIKEK 197


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 124 YLKSKIFIAFNMTQQQYSSFTS 59
           YLK  IF+AF  TQ+  +  TS
Sbjct: 836 YLKEDIFLAFKETQEGENYDTS 857


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -1

Query: 97  FNMTQQQYSSFTSHNKTNK*FSFCAVENMAVN 2
           FN+T    S  T+  K       C V N +VN
Sbjct: 206 FNLTLASNSQLTTSTKFTGLIQICKVPNESVN 237


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 25  RRTKIICLFYC 57
           R  ++ICLFYC
Sbjct: 637 RTNQLICLFYC 647


>SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 77  LLLRHIESYKYFRLQI 124
           LL RHIES K  +LQ+
Sbjct: 111 LLFRHIESSKLRKLQL 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 694,217
Number of Sequences: 5004
Number of extensions: 9874
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 2,362,478
effective HSP length: 42
effective length of database: 2,152,310
effective search space used: 40893890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)