Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27l12
(458 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|... 27 1.8
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 27 1.8
SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar... 26 2.4
SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual 25 4.2
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 25 7.3
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 25 7.3
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc... 25 7.3
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 24 9.7
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy... 24 9.7
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 24 9.7
>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 503
Score = 26.6 bits (56), Expect = 1.8
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = +1
Query: 244 GKVERKRGQRAASHYRQRTYPLMQ-FGNQSPVLXFGFTFIRLTWNVGR*PRCE*SQRQKR 420
G ++ GQ + ++ Y + G ++ + F F+ W + C + K
Sbjct: 136 GWADKDYGQTIETDIKRFAYTRHEPIGVCGQIIPWNFPFLMCAWKIAPAVACGNTIILKT 195
Query: 421 AEPTPSSAAC 450
AE TP SA C
Sbjct: 196 AELTPLSALC 205
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 26.6 bits (56), Expect = 1.8
Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 2/107 (1%)
Frame = +2
Query: 125 FLHLHHVLCGVRCHSAY*IVTPGATQRTRSDSLQ*RHADLARSNGNGVRGRRATTASEHT 304
F+H +L GV+ + ++TP + R++ R R+NGN RG + +
Sbjct: 845 FVHKSMLLRGVKMPNR--VLTPEDINQVRAE----RSFSSRRNNGNSYRGGHQSYGVRRS 898
Query: 305 H*CSLATSRRYXISVLRLFGLRGTSDGSRGANN--RSDKNARSRPRH 439
+ +SR+ V F G G N RS+ + SR H
Sbjct: 899 YQSQSYSSRQSYTGVTNGFANGGVQPPWSGNGNFPRSNASYNSRGGH 945
>SPCC1223.02 |nmt1|thi3|no message in thiamine
Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 346
Score = 26.2 bits (55), Expect = 2.4
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -1
Query: 329 DWLPNCINGYVRW 291
D+ PNC NGY+ W
Sbjct: 291 DFEPNCTNGYLTW 303
>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 25.4 bits (53), Expect = 4.2
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -3
Query: 321 AKLHQWVCSLAVVARRPLTPFPFDLARSACLHCSESERVRWVAPGVTIQ 175
+KL V L +V L PF+ +CS E + VA GVT++
Sbjct: 382 SKLRHLVTRLELVDAIALA-HPFNKGFDKVYNCSSEEEAQQVASGVTLE 429
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 24.6 bits (51), Expect = 7.3
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +2
Query: 311 CSLATSRRYXISVLRLFGLRGTSDGSRGANNRSDKNARSRPRHLPL 448
CS+ + RR +G+ G DG+ G N D + PR++ L
Sbjct: 1190 CSILSERRSRAP----YGMNGGEDGAMGVNTWIDCSNPDFPRYVNL 1231
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 24.6 bits (51), Expect = 7.3
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -2
Query: 85 RALHFIVPTLISHGHW 38
+A+H I PTL +H W
Sbjct: 249 KAMHMISPTLDAHNQW 264
>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 703
Score = 24.6 bits (51), Expect = 7.3
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -1
Query: 419 RFCRCDYSHRGYRPTFHVSRINVKPKXSTGDW 324
++ R YS RGY+ + NV ++G W
Sbjct: 326 KYMRYQYSKRGYQEVITPNMYNVNLWKTSGHW 357
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 24.2 bits (50), Expect = 9.7
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 225 NEDMQTWQGRTETGSEGGEPLPPANIPIDA 314
+E+M G ++ S P PP +PID+
Sbjct: 105 DENMNVNNGNLDSFSSSSAPPPPPILPIDS 134
>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 656
Score = 24.2 bits (50), Expect = 9.7
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 170 HYDTEHRKEHDEDEETD 120
H+ E E DEDE+TD
Sbjct: 220 HFAGEELSEEDEDEDTD 236
>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 659
Score = 24.2 bits (50), Expect = 9.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 184 NNSVSTMTPNTAKNMMKMKKLILARSLAREDI 89
NN + P KN+ M++LI+A S + I
Sbjct: 302 NNPTLSFNPELEKNLKLMQELIVAESSKTQHI 333
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,789,587
Number of Sequences: 5004
Number of extensions: 33543
Number of successful extensions: 89
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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